UHGV-0170716

Genome information

Genome length 32,234 bps

CDS count 54

Completeness 68.93% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170716
vOTU ID	vOTU-016558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_557315
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.39
Jumbo phage	No

Genome content
Genome length	32,234 bps
GC content	46.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.71%
Average CDS length	541.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170716_1	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0170716_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0170716_1	COG	COG2369	NA	NA
UHGV-0170716_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0170716_2	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0170716_2	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0170716_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0170716_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170716_3	PHROG	phrog_10250	NA	unknown function
UHGV-0170716_3	UniRef90	UniRef90_A0A352TI19	PBSX family phage terminase large subunit	NA
UHGV-0170716_3	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-0170716_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0170716_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0170716_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170716_3	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0170716_4	PHROG	phrog_2412	NA	unknown function
UHGV-0170716_4	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0170716_4	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0170716_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170716_5	UniRef90	UniRef90_R7GSL5	Putative RNA polymerase sigma 28 subunit FliA/WhiG subfamily	NA
UHGV-0170716_5	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0170716_5	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0170716_5	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0170716_7	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0170716_7	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0170716_7	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0170716_7	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0170716_7	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0170716_7	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0170716_7	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0170716_7	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0170716_8	PHROG	phrog_24490	NA	unknown function
UHGV-0170716_9	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0170716_11	PHROG	phrog_13561	NA	unknown function
UHGV-0170716_11	Structural annotation	PF21441, COG5045	NA	NA
UHGV-0170716_12	Structural annotation	PF13613	NA	NA
UHGV-0170716_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0170716_13	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0170716_13	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0170716_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170716_13	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0170716_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170716_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170716_14	UniRef90	UniRef90_R5VJF6	Single-stranded DNA-binding protein	NA
UHGV-0170716_14	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-0170716_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170716_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170716_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170716_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170716_14	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0170716_15	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0170716_15	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0170716_15	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0170716_15	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0170716_15	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0170716_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170716_16	UniRef90	UniRef90_R5V6A9	Erf family protein	NA
UHGV-0170716_16	eggNOG-mapper	1329250.WOSG25_420010	ERF superfamily	NA
UHGV-0170716_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0170716_16	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0170716_22	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-0170716_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170716_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0170716_28	UniRef90	UniRef90_UPI001C0D97C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0170716_28	eggNOG-mapper	1347392.CCEZ01000015_gene2859	Phage antirepressor protein	NA
UHGV-0170716_28	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0170716_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170716_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0170716_28	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0170716_29	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0170716_30	PHROG	phrog_5079	NA	unknown function
UHGV-0170716_30	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0170716_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170716_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170716_31	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0170716_31	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0170716_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170716_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170716_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0170716_32	PHROG	phrog_1914	NA	unknown function
UHGV-0170716_32	UniRef90	UniRef90_R7FBB0	Putative toxin-antitoxin system toxin component	NA
UHGV-0170716_32	eggNOG-mapper	1121451.DESAM_20380	NA	NA
UHGV-0170716_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0170716_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0170716_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0170716_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0170716_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0170716_33	UniRef90	UniRef90_A0A3C0II41	Zn_ribbon_recom domain-containing protein	NA
UHGV-0170716_33	eggNOG-mapper	935948.KE386495_gene1360	Resolvase, N terminal domain	NA
UHGV-0170716_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0170716_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0170716_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0170716_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0170716_33	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0170716_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0170716_34	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0170716_34	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-0170716_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0170716_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0170716_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0170716_35	PHROG	phrog_4709	NA	unknown function
UHGV-0170716_35	eggNOG-mapper	397288.C806_00754	NA	NA
UHGV-0170716_35	AcrCatalog	cluster_3300	NA	NA
UHGV-0170716_36	eggNOG-mapper	1384066.JAGT01000001_gene943	NA	NA
UHGV-0170716_37	PHROG	phrog_3777	NA	unknown function
UHGV-0170716_37	UniRef90	UniRef90_UPI001D004CDA	NA	NA
UHGV-0170716_37	eggNOG-mapper	411473.RUMCAL_03423	NA	NA
UHGV-0170716_37	Pfam	PF12957	NA	DUF3846
UHGV-0170716_37	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0170716_38	PHROG	phrog_21141	NA	unknown function
UHGV-0170716_38	UniRef90	UniRef90_A0A0D0SC67	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0170716_38	eggNOG-mapper	742741.HMPREF9475_02379	NA	NA
UHGV-0170716_38	AcrCatalog	cluster_5293	NA	NA
UHGV-0170716_39	PHROG	phrog_2945	NA	unknown function
UHGV-0170716_39	UniRef90	UniRef90_W7US45	Hydrogenase maturation protein HypF	NA
UHGV-0170716_39	eggNOG-mapper	1235790.C805_00861	NA	NA
UHGV-0170716_40	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0170716_40	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0170716_40	UniRef90	UniRef90_UPI00048C5235	gamma-glutamylcyclotransferase	NA
UHGV-0170716_40	eggNOG-mapper	1410670.JHXF01000015_gene2284	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0170716_40	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0170716_40	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0170716_40	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0170716_41	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0170716_41	UniRef90	UniRef90_A0A1C5SI47	Putative amidoligase enzyme	NA
UHGV-0170716_41	eggNOG-mapper	1410670.JHXF01000015_gene2282	NA	NA
UHGV-0170716_41	AcrCatalog	cluster_16277	NA	NA
UHGV-0170716_41	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0170716_41	Structural annotation	PF12224	NA	NA
UHGV-0170716_42	PHROG	phrog_3782	NA	unknown function
UHGV-0170716_42	UniRef90	UniRef90_A0A1H7KZT6	NA	NA
UHGV-0170716_42	eggNOG-mapper	1341157.RF007C_02710	NA	NA
UHGV-0170716_42	Pfam	PF14192	NA	DUF4314
UHGV-0170716_42	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0170716_43	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0170716_43	UniRef90	UniRef90_UPI001D030171	virulence protein	NA
UHGV-0170716_43	eggNOG-mapper	1384066.JAGT01000001_gene950	NA	NA
UHGV-0170716_43	AcrCatalog	cluster_14489	NA	NA
UHGV-0170716_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0170716_44	PHROG	phrog_38038	NA	unknown function
UHGV-0170716_44	UniRef90	UniRef90_A0A1C5SI48	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170716_44	eggNOG-mapper	1121334.KB911068_gene2281	C-5 cytosine-specific DNA methylase	NA
UHGV-0170716_44	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0170716_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170716_44	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170716_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170716_44	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0170716_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0170716_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0170716_45	UniRef90	UniRef90_R9MQN9	PAPS_reduct domain-containing protein	NA
UHGV-0170716_45	eggNOG-mapper	1235800.C819_03827	NA	NA
UHGV-0170716_45	PADLOC	SspD_00001	SspD	SSP
UHGV-0170716_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0170716_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0170716_45	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0170716_46	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0170716_46	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0170716_46	UniRef90	UniRef90_A0A1K1YLD1	DNA modification methylase	NA
UHGV-0170716_46	eggNOG-mapper	1384066.JAGT01000001_gene951	NA	NA
UHGV-0170716_46	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0170716_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0170716_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0170716_46	COG	COG0863	DNA modification methylase	NA
UHGV-0170716_46	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0170716_47	eggNOG-mapper	411473.RUMCAL_02746	NA	NA
UHGV-0170716_47	AcrCatalog	cluster_9768	NA	NA
UHGV-0170716_48	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170716_48	UniRef90	UniRef90_L1N010	HNH endonuclease domain protein (Fragment)	NA
UHGV-0170716_48	eggNOG-mapper	1127695.HMPREF9163_00430	HNH endonuclease	NA
UHGV-0170716_48	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0170716_49	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0170716_49	UniRef90	UniRef90_UPI001D01685C	P27 family phage terminase small subunit	NA
UHGV-0170716_49	eggNOG-mapper	552396.HMPREF0863_01426	NA	NA
UHGV-0170716_49	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0170716_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0170716_50	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170716_50	UniRef90	UniRef90_A0A352TL83	HNH endonuclease	NA
UHGV-0170716_50	eggNOG-mapper	411473.RUMCAL_03130	HNH endonuclease	NA
UHGV-0170716_50	AcrCatalog	cluster_19695	NA	NA
UHGV-0170716_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0170716_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170716_50	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0170716_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170716_51	UniRef90	UniRef90_A0A352TL82	Sigma70_r4 domain-containing protein	NA
UHGV-0170716_51	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0170716_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170716_52	UniRef90	UniRef90_A0A1H3XCK5	Phage transcriptional regulator, ArpU family	NA
UHGV-0170716_52	eggNOG-mapper	411473.RUMCAL_00496	NA	NA
UHGV-0170716_52	Pfam	PF07374	NA	DUF1492
UHGV-0170716_52	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0170716_53	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170716_53	UniRef90	UniRef90_U2KF33	VRR-NUC domain protein	NA
UHGV-0170716_53	eggNOG-mapper	411473.RUMCAL_00497	VRR_NUC	NA
UHGV-0170716_53	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0170716_54	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0170716_54	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0170716_54	UniRef90	UniRef90_UPI0018DE8C49	phage/plasmid primase, P4 family	NA
UHGV-0170716_54	eggNOG-mapper	411473.RUMCAL_00498	D5 N terminal like	NA
UHGV-0170716_54	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0170716_54	Pfam	PF19263	NA	DUF5906
UHGV-0170716_54	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0170716_54	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0170716_54	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0170716_54	Structural annotation	PF05272, PF02257, MF_01625, TIGR01613, COG3378	NA	NA