UHGV-0170798

Genome information

Genome length 33,104 bps

CDS count 49

Completeness 54.20% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170798
vOTU ID	vOTU-028489
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_501213
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.02
Jumbo phage	No

Genome content
Genome length	33,104 bps
GC content	45.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.02%
Average CDS length	637.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170798_1	PHROG	phrog_14367	NA	unknown function
UHGV-0170798_1	UniRef90	UniRef90_A0A3N5LBU6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0170798_1	eggNOG-mapper	1121934.AUDX01000014_gene1571	Lysin motif	NA
UHGV-0170798_1	Pfam	PF01476	LysM domain	LysM
UHGV-0170798_1	COG	COG1388	LysM repeat	NA
UHGV-0170798_4	PHROG	phrog_1366	NA	unknown function
UHGV-0170798_4	UniRef90	UniRef90_UPI001EDFC883	ATP-binding protein	NA
UHGV-0170798_4	eggNOG-mapper	555779.Dthio_PD3616	SMART AAA ATPase	NA
UHGV-0170798_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0170798_4	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0170798_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0170798_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0170798_5	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0170798_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0170798_6	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170798_6	UniRef90	UniRef90_UPI0011DDD220	helix-turn-helix domain-containing protein	NA
UHGV-0170798_6	eggNOG-mapper	1232453.BAIF02000016_gene3127	NA	NA
UHGV-0170798_6	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0170798_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170798_6	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0170798_7	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0170798_7	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0170798_7	Structural annotation	PF11417	NA	NA
UHGV-0170798_11	PHROG	phrog_10714	NA	unknown function
UHGV-0170798_11	Structural annotation	PF21173	NA	NA
UHGV-0170798_13	PHROG	phrog_3878	NA	unknown function
UHGV-0170798_13	Structural annotation	PF19607	NA	NA
UHGV-0170798_16	PHROG	phrog_9207	NA	unknown function
UHGV-0170798_16	eggNOG-mapper	264730.PSPPH_2145	NA	NA
UHGV-0170798_20	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0170798_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170798_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170798_22	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0170798_22	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0170798_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170798_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170798_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170798_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170798_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0170798_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170798_23	UniRef90	UniRef90_A0A7C6K533	NA	NA
UHGV-0170798_23	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0170798_23	Pfam	PF06356	NA	DUF1064
UHGV-0170798_23	Structural annotation	PF06356	NA	NA
UHGV-0170798_24	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0170798_24	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0170798_26	PHROG	phrog_2329	NA	unknown function
UHGV-0170798_26	UniRef90	UniRef90_UPI001A21AB60	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0170798_26	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-0170798_26	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0170798_26	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0170798_27	UniRef90	UniRef90_A0A7G9WJD7	Helix-turn-helix transcriptional regulator	NA
UHGV-0170798_27	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0170798_30	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0170798_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0170798_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0170798_31	UniRef90	UniRef90_UPI001C8DFA18	terminase small subunit	NA
UHGV-0170798_31	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0170798_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0170798_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0170798_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0170798_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170798_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0170798_32	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0170798_32	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0170798_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0170798_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0170798_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170798_32	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0170798_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0170798_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0170798_34	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0170798_34	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0170798_34	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0170798_34	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0170798_37	PHROG	phrog_334	major head protein	head and packaging
UHGV-0170798_37	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0170798_37	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0170798_37	Pfam	PF13252	NA	DUF4043
UHGV-0170798_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0170798_37	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0170798_38	PHROG	phrog_399	structural protein	head and packaging
UHGV-0170798_38	Pfam	PF20387	NA	DUF6682
UHGV-0170798_38	Structural annotation	PF20387	NA	NA
UHGV-0170798_39	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0170798_39	UniRef90	UniRef90_A0A1G6NQU3	Flagellin FlgL	NA
UHGV-0170798_39	eggNOG-mapper	1401067.HMPREF0872_03800	cellulase activity	NA
UHGV-0170798_39	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0170798_40	PHROG	phrog_2427	NA	unknown function
UHGV-0170798_42	PHROG	phrog_19695	NA	unknown function
UHGV-0170798_42	eggNOG-mapper	1232452.BAIB02000007_gene1608	Collagen triple helix repeat	NA
UHGV-0170798_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0170798_42	Structural annotation	PF03906	NA	NA
UHGV-0170798_43	Structural annotation	PF16116	NA	NA
UHGV-0170798_44	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0170798_44	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0170798_44	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0170798_44	Pfam	PF14301	NA	DUF4376
UHGV-0170798_44	Structural annotation	PF14301	NA	NA
UHGV-0170798_45	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0170798_45	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0170798_46	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0170798_47	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0170798_47	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0170798_49	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0170798_49	Pfam	PF01464	Transglycosylase SLT domain	SLT