UHGV-0170812

Genome information

Genome length 25,575 bps

CDS count 45

Completeness 65.54% (medium-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170812
vOTU ID	vOTU-028490
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_501172
BioSample	SAMN06110451
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	29.79
Jumbo phage	No

Genome content
Genome length	25,575 bps
GC content	55.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	86.45%
Average CDS length	494.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170812_1	UniRef90	UniRef90_UPI0019568B57	ribbon-helix-helix protein, CopG family	NA
UHGV-0170812_1	eggNOG-mapper	877411.JMMA01000002_gene1754	Ribbon-helix-helix protein, copG family	NA
UHGV-0170812_1	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0170812_2	KOfam	K02510	hpaI, hpcH; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]	NA
UHGV-0170812_2	UniRef90	UniRef90_R5B8D9	HpcH_HpaI domain-containing protein	NA
UHGV-0170812_2	eggNOG-mapper	1121324.CLIT_10c01820	Belongs to the HpcH HpaI aldolase family	NA
UHGV-0170812_2	Pfam	PF03328	HpcH/HpaI aldolase/citrate lyase family	HpcH_HpaI
UHGV-0170812_2	COG	COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	NA
UHGV-0170812_3	PHROG	phrog_14275	NA	unknown function
UHGV-0170812_3	UniRef90	UniRef90_R6Y193	zinc_ribbon_2 domain-containing protein	NA
UHGV-0170812_3	eggNOG-mapper	1111121.HMPREF1247_0552	NA	NA
UHGV-0170812_3	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0170812_3	Structural annotation	PF07233, NF038353, COG5633	NA	NA
UHGV-0170812_4	KOfam	K14059	int; integrase	NA
UHGV-0170812_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0170812_4	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0170812_4	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0170812_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170812_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170812_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170812_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0170812_5	PHROG	phrog_33519	NA	unknown function
UHGV-0170812_5	eggNOG-mapper	97139.C824_02721	NA	NA
UHGV-0170812_5	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0170812_6	Structural annotation	PF21227	NA	NA
UHGV-0170812_8	PHROG	phrog_1914	NA	unknown function
UHGV-0170812_8	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0170812_8	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0170812_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0170812_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0170812_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0170812_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170812_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170812_9	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0170812_9	eggNOG-mapper	1125712.HMPREF1316_2394	Peptidase S24-like	NA
UHGV-0170812_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0170812_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170812_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170812_9	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0170812_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0170812_10	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0170812_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0170812_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170812_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170812_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0170812_12	PHROG	phrog_3240	NA	unknown function
UHGV-0170812_12	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-0170812_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0170812_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0170812_15	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0170812_15	eggNOG-mapper	1280390.CBQR020000174_gene4630	AbrB family transcriptional regulator	NA
UHGV-0170812_15	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0170812_15	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0170812_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0170812_15	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0170812_18	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170812_18	UniRef90	UniRef90_A0A1Y4L975	YqaJ domain-containing protein	NA
UHGV-0170812_18	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0170812_18	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0170812_18	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0170812_18	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0170812_18	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0170812_19	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0170812_20	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0170812_20	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170812_20	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0170812_20	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0170812_20	Pfam	PF03837	RecT family	RecT
UHGV-0170812_20	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0170812_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0170812_20	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0170812_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170812_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170812_21	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0170812_21	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0170812_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170812_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170812_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170812_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170812_21	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0170812_22	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170812_22	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-0170812_22	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0170812_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170812_25	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0170812_25	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0170812_25	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0170812_25	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0170812_25	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0170812_25	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0170812_31	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0170812_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0170812_31	UniRef90	UniRef90_UPI0011220CD9	Lar family restriction alleviation protein	NA
UHGV-0170812_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0170812_31	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0170812_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0170812_31	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0170812_33	PHROG	phrog_3136	NA	unknown function
UHGV-0170812_33	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0170812_33	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0170812_33	Pfam	PF04266	ASCH domain	ASCH
UHGV-0170812_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0170812_33	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0170812_36	PHROG	phrog_474	phosphofructokinase	other
UHGV-0170812_36	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0170812_36	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0170812_36	Pfam	PF19905	NA	DUF6378
UHGV-0170812_36	Structural annotation	PF19905	NA	NA
UHGV-0170812_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0170812_37	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170812_37	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0170812_37	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0170812_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0170812_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0170812_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170812_38	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0170812_38	eggNOG-mapper	411468.CLOSCI_00221	NA	NA
UHGV-0170812_38	Pfam	PF07374	NA	DUF1492
UHGV-0170812_38	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0170812_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170812_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0170812_39	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0170812_39	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0170812_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0170812_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0170812_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0170812_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0170812_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170812_39	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0170812_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0170812_40	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0170812_40	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0170812_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0170812_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0170812_41	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0170812_41	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0170812_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0170812_41	COG	COG2369	NA	NA
UHGV-0170812_42	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0170812_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0170812_43	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0170812_43	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0170812_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0170812_43	Structural annotation	PF06810	NA	NA
UHGV-0170812_44	PHROG	phrog_267	major head protein	head and packaging
UHGV-0170812_44	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0170812_44	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA