UHGV-0170814

Genome information

Genome length 47,050 bps

CDS count 83

Completeness 79.75% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170814
vOTU ID	vOTU-028491
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_501170
BioSample	SAMN06110451
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.88
Jumbo phage	No

Genome content
Genome length	47,050 bps
GC content	38.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	86.54%
Average CDS length	495.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170814_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0170814_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0170814_1	Structural annotation	PF16677	NA	NA
UHGV-0170814_3	PHROG	phrog_31631	NA	unknown function
UHGV-0170814_3	eggNOG-mapper	1235802.C823_04520	NA	NA
UHGV-0170814_8	Structural annotation	PF13973	NA	NA
UHGV-0170814_12	PHROG	phrog_1233	NA	unknown function
UHGV-0170814_12	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0170814_13	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0170814_14	PHROG	phrog_20016	NA	unknown function
UHGV-0170814_14	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0170814_14	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0170814_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0170814_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170814_15	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0170814_15	UniRef90	UniRef90_A0A416G2X7	AntA domain-containing protein	NA
UHGV-0170814_15	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0170814_15	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0170814_15	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0170814_15	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0170814_17	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0170814_17	eggNOG-mapper	445971.ANASTE_00673	NA	NA
UHGV-0170814_17	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0170814_18	PHROG	phrog_16490	NA	unknown function
UHGV-0170814_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0170814_19	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0170814_20	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0170814_22	KOfam	K14059	int; integrase	NA
UHGV-0170814_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0170814_22	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0170814_22	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0170814_22	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0170814_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170814_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170814_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170814_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0170814_23	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0170814_23	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0170814_23	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0170814_23	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0170814_23	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0170814_23	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0170814_23	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0170814_24	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0170814_25	PHROG	phrog_17284	NA	unknown function
UHGV-0170814_25	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170814_25	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0170814_25	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0170814_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170814_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170814_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0170814_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0170814_28	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0170814_28	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0170814_28	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0170814_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170814_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170814_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170814_30	PHROG	phrog_10714	NA	unknown function
UHGV-0170814_30	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0170814_32	PHROG	phrog_8684	NA	unknown function
UHGV-0170814_32	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-0170814_32	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0170814_32	Pfam	PF09643	YopX protein	YopX
UHGV-0170814_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0170814_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0170814_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0170814_34	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0170814_35	PHROG	phrog_21026	NA	unknown function
UHGV-0170814_41	PHROG	phrog_9804	NA	unknown function
UHGV-0170814_41	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0170814_41	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0170814_41	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0170814_41	Structural annotation	PF11417	NA	NA
UHGV-0170814_42	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0170814_42	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0170814_42	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0170814_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170814_43	Structural annotation	PF17388	NA	NA
UHGV-0170814_45	PHROG	phrog_19106	NA	unknown function
UHGV-0170814_45	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0170814_45	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0170814_45	Structural annotation	TIGR01453	NA	NA
UHGV-0170814_47	PHROG	phrog_20593	NA	unknown function
UHGV-0170814_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170814_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170814_49	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0170814_49	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0170814_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170814_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170814_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170814_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170814_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0170814_53	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0170814_53	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0170814_53	eggNOG-mapper	476272.RUMHYD_03342	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0170814_53	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0170814_53	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0170814_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0170814_54	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0170814_54	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0170814_54	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0170814_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0170814_55	PHROG	phrog_25456	NA	unknown function
UHGV-0170814_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0170814_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170814_56	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0170814_56	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0170814_56	Pfam	PF03837	RecT family	RecT
UHGV-0170814_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0170814_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0170814_56	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0170814_59	PHROG	phrog_2164	NA	unknown function
UHGV-0170814_59	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0170814_60	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0170814_60	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170814_60	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0170814_60	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0170814_60	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0170814_60	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0170814_63	eggNOG-mapper	1123488.ATUF01000002_gene511	NA	NA
UHGV-0170814_65	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0170814_65	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0170814_65	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0170814_65	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170814_65	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0170814_65	COG	COG3617	Prophage antirepressor	NA
UHGV-0170814_65	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0170814_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170814_66	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0170814_66	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0170814_66	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0170814_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170814_66	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0170814_67	KOfam	K07497	K07497; putative transposase	NA
UHGV-0170814_67	PHROG	phrog_157	transposase	integration and excision
UHGV-0170814_67	UniRef90	UniRef90_A0A7C6U6M8	IS3 family transposase	NA
UHGV-0170814_67	eggNOG-mapper	591001.Acfer_1049	PFAM Integrase catalytic region	NA
UHGV-0170814_67	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0170814_67	Pfam	PF00665	Integrase core domain	rve
UHGV-0170814_67	Pfam	PF13333	Integrase core domain	rve_2
UHGV-0170814_67	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0170814_67	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0170814_67	Structural annotation	PF00665, NF033516, COG2801	NA	NA
UHGV-0170814_68	UniRef90	UniRef90_UPI00103269DC	transposase	NA
UHGV-0170814_68	eggNOG-mapper	742765.HMPREF9457_03731	NA	NA
UHGV-0170814_68	Pfam	PF20310	Transposon related HTH domain protein	HTH_Tnp_2
UHGV-0170814_69	PHROG	phrog_3037	transcriptional repressor	transcription regulation
UHGV-0170814_69	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0170814_69	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0170814_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170814_69	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0170814_69	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0170814_70	PHROG	phrog_3845	NA	unknown function
UHGV-0170814_70	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0170814_72	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0170814_73	PHROG	phrog_6616	tail protein	tail
UHGV-0170814_73	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0170814_73	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0170814_73	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0170814_73	Structural annotation	PF05113, PF18957, NF033848, NF038186, COG3500	NA	NA
UHGV-0170814_74	PHROG	phrog_1194	NA	unknown function
UHGV-0170814_74	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0170814_74	Pfam	PF20458	NA	DUF6711
UHGV-0170814_74	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0170814_75	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0170814_75	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0170814_75	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0170814_75	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0170814_76	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170814_76	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0170814_76	eggNOG-mapper	1380384.JADN01000003_gene632	Intron encoded nuclease repeat motif	NA
UHGV-0170814_76	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0170814_76	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0170814_76	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0170814_76	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0170814_77	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0170814_77	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0170814_77	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0170814_77	COG	COG1511	NA	NA
UHGV-0170814_78	KOfam	K07273	acm; lysozyme	NA
UHGV-0170814_78	PHROG	phrog_291	endolysin	lysis
UHGV-0170814_78	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0170814_78	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0170814_78	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0170814_78	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0170814_78	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0170814_78	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0170814_81	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0170814_81	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0170814_82	Structural annotation	PF05657	NA	NA
UHGV-0170814_83	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0170814_83	AcrCatalog	cluster_24841	NA	NA