UHGV-0170839

Genome information

vOTU vOTU-019712

Genome length 53,845 bps

CDS count 65

Completeness 81.68% (medium-quality)

geNomad score 0.9493

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170839
vOTU ID	vOTU-019712
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_545539
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9493
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.83
Jumbo phage	No

Genome content
Genome length	53,845 bps
GC content	43.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.48%
Average CDS length	743.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170839_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170839_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0170839_1	UniRef90	UniRef90_UPI00189784CE	phage antirepressor KilAC domain-containing protein	NA
UHGV-0170839_1	eggNOG-mapper	1122971.BAME01000225_gene6795	BRO family, N-terminal domain	NA
UHGV-0170839_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170839_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170839_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0170839_2	UniRef90	UniRef90_UPI001C8B4610	NA	NA
UHGV-0170839_2	eggNOG-mapper	411479.BACUNI_02713	NA	NA
UHGV-0170839_2	Pfam	PF16476	NA	DUF5053
UHGV-0170839_2	Structural annotation	PF16476	NA	NA
UHGV-0170839_3	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0170839_5	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0170839_5	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0170839_5	Pfam	PF18827	Large polyvalent protein-associated domain 14	LPD14
UHGV-0170839_5	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0170839_5	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0170839_5	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0170839_6	UniRef90	UniRef90_A0A7X8BNE3	Helix-turn-helix transcriptional regulator	NA
UHGV-0170839_6	eggNOG-mapper	1095752.HMPREF9969_2379	NA	NA
UHGV-0170839_7	UniRef90	UniRef90_UPI001554D5FA	NA	NA
UHGV-0170839_7	eggNOG-mapper	1235788.C802_03301	NA	NA
UHGV-0170839_7	Pfam	PF10387	NA	DUF2442
UHGV-0170839_7	Structural annotation	PF10387, PF13560, NF041951, COG3655	NA	NA
UHGV-0170839_8	UniRef90	UniRef90_UPI001557AFEF	NA	NA
UHGV-0170839_8	eggNOG-mapper	679190.HMPREF0650_0939	NA	NA
UHGV-0170839_8	Pfam	PF13711	NA	DUF4160
UHGV-0170839_8	Structural annotation	PF13711	NA	NA
UHGV-0170839_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170839_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0170839_9	UniRef90	UniRef90_I9QJL9	Rha family phage regulatory protein	NA
UHGV-0170839_9	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0170839_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0170839_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170839_9	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0170839_9	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0170839_9	Structural annotation	PF09669, PF03374, TIGR02681, COG3645, COG3617	NA	NA
UHGV-0170839_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0170839_11	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-0170839_11	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0170839_11	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0170839_11	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0170839_12	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-0170839_12	Structural annotation	PF01694, MF_01594, NF008155, COG0705	NA	NA
UHGV-0170839_14	PHROG	phrog_22323	NA	unknown function
UHGV-0170839_14	eggNOG-mapper	1347393.HG726020_gene1830	NA	NA
UHGV-0170839_15	PHROG	phrog_26635	NA	unknown function
UHGV-0170839_15	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-0170839_15	eggNOG-mapper	742726.HMPREF9448_00705	NA	NA
UHGV-0170839_15	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0170839_17	PHROG	phrog_22135	NA	unknown function
UHGV-0170839_17	eggNOG-mapper	1121098.HMPREF1534_01118	NA	NA
UHGV-0170839_17	Structural annotation	PF17212	NA	NA
UHGV-0170839_18	PHROG	phrog_15610	protease	other
UHGV-0170839_18	eggNOG-mapper	667015.Bacsa_1191	NA	NA
UHGV-0170839_19	PHROG	phrog_19698	NA	unknown function
UHGV-0170839_19	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0170839_21	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0170839_21	PHROG	phrog_435	endolysin	lysis
UHGV-0170839_21	UniRef90	UniRef90_S3ZJE6	MurNAc-LAA domain-containing protein	NA
UHGV-0170839_21	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0170839_21	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0170839_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0170839_21	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0170839_22	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0170839_22	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0170839_23	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-0170839_26	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0170839_27	PHROG	phrog_16490	NA	unknown function
UHGV-0170839_27	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0170839_27	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0170839_28	PHROG	phrog_31654	NA	unknown function
UHGV-0170839_28	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0170839_29	PHROG	phrog_28898	NA	unknown function
UHGV-0170839_29	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0170839_29	Structural annotation	PF10781	NA	NA
UHGV-0170839_31	PHROG	phrog_38431	NA	unknown function
UHGV-0170839_31	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0170839_31	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0170839_32	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-0170839_32	eggNOG-mapper	411901.BACCAC_01107	NA	NA
UHGV-0170839_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0170839_34	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0170839_34	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0170839_36	PHROG	phrog_19255	NA	unknown function
UHGV-0170839_36	eggNOG-mapper	679191.HMPREF9018_0440	NA	NA
UHGV-0170839_39	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0170839_39	UniRef90	UniRef90_UPI00189FA52E	NA	NA
UHGV-0170839_39	eggNOG-mapper	706434.HMPREF9429_01721	NA	NA
UHGV-0170839_39	Pfam	PF10097	NA	DUF2335
UHGV-0170839_39	COG	COG5346	NA	NA
UHGV-0170839_39	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0170839_42	Structural annotation	PF08928	NA	NA
UHGV-0170839_43	PHROG	phrog_8684	NA	unknown function
UHGV-0170839_43	UniRef90	UniRef90_UPI001C016A5B	YopX family protein	NA
UHGV-0170839_43	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0170839_43	Pfam	PF09643	YopX protein	YopX
UHGV-0170839_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0170839_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0170839_44	PHROG	phrog_32732	NA	unknown function
UHGV-0170839_44	UniRef90	UniRef90_A0A6I0HVM8	NA	NA
UHGV-0170839_44	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0170839_44	dbAPIS	APIS052	NA	NA
UHGV-0170839_44	Structural annotation	PF10458	NA	NA
UHGV-0170839_45	PHROG	phrog_874	NA	unknown function
UHGV-0170839_45	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0170839_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0170839_46	PHROG	phrog_4245	NA	unknown function
UHGV-0170839_48	PHROG	phrog_12005	NA	unknown function
UHGV-0170839_51	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0170839_51	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0170839_51	UniRef90	UniRef90_UPI001C378DEE	DNA adenine methylase	NA
UHGV-0170839_51	eggNOG-mapper	641526.ADIWIN_2664	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0170839_51	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0170839_51	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0170839_51	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0170839_52	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0170839_52	UniRef90	UniRef90_UPI001C37C50E	class I SAM-dependent methyltransferase	NA
UHGV-0170839_52	eggNOG-mapper	1121100.JCM6294_542	Methyltransferase domain	NA
UHGV-0170839_52	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0170839_52	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0170839_52	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0170839_52	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0170839_53	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170839_53	UniRef90	UniRef90_UPI001C37881F	NUMOD4 domain-containing protein	NA
UHGV-0170839_53	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0170839_53	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0170839_53	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0170839_53	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0170839_53	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0170839_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0170839_54	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0170839_54	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170839_54	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-0170839_54	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0170839_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170839_54	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170839_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170839_54	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0170839_55	PHROG	phrog_19572	NA	unknown function
UHGV-0170839_55	UniRef90	UniRef90_UPI001E510457	NA	NA
UHGV-0170839_55	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0170839_55	Pfam	PF14902	NA	DUF4494
UHGV-0170839_55	Structural annotation	PF14902	NA	NA
UHGV-0170839_57	Structural annotation	PF08587	NA	NA
UHGV-0170839_58	UniRef90	UniRef90_UPI000668E03B	helix-turn-helix transcriptional regulator	NA
UHGV-0170839_58	eggNOG-mapper	929703.KE386491_gene2035	NA	NA
UHGV-0170839_60	PHROG	phrog_32516	NA	unknown function
UHGV-0170839_60	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0170839_60	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0170839_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170839_62	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0170839_62	UniRef90	UniRef90_UPI00189784CE	phage antirepressor KilAC domain-containing protein	NA
UHGV-0170839_62	eggNOG-mapper	1122985.HMPREF1991_02236	NA	NA
UHGV-0170839_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170839_62	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170839_62	COG	COG3617	Prophage antirepressor	NA
UHGV-0170839_62	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0170839_63	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0170839_63	UniRef90	UniRef90_A0A8D9PF75	Antirepressor protein	NA
UHGV-0170839_63	eggNOG-mapper	679190.HMPREF0650_0366	KilA-N domain	NA
UHGV-0170839_63	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0170839_63	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170839_63	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0170839_64	PHROG	phrog_2523	NA	unknown function
UHGV-0170839_64	UniRef90	UniRef90_UPI00189C3F5E	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0170839_64	eggNOG-mapper	1410666.JHXG01000008_gene694	NA	NA
UHGV-0170839_64	Pfam	PF05973	NA	Gp49
UHGV-0170839_64	COG	COG4683	NA	NA
UHGV-0170839_64	Structural annotation	PF05973, TIGR02385, COG4679	NA	NA
UHGV-0170839_65	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0170839_65	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0170839_65	UniRef90	UniRef90_UPI00189BDFFF	helix-turn-helix domain-containing protein	NA
UHGV-0170839_65	eggNOG-mapper	1122971.BAME01000119_gene6170	Helix-turn-helix domain	NA
UHGV-0170839_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170839_65	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0170839_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA