UHGV-0171017

Genome information

Genome length 31,870 bps

CDS count 42

Completeness 91.48% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171017
vOTU ID	vOTU-068331
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_538813
BioSample	SAMN06328475
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.58
Jumbo phage	No

Genome content
Genome length	31,870 bps
GC content	55.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.18%
Average CDS length	704.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171017_2	PHROG	phrog_1863	NA	unknown function
UHGV-0171017_2	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0171017_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0171017_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171017_3	PHROG	phrog_5182	endolysin	lysis
UHGV-0171017_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0171017_3	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0171017_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171017_3	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0171017_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171017_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0171017_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0171017_4	PHROG	phrog_11541	NA	unknown function
UHGV-0171017_4	eggNOG-mapper	1175629.AJTG01000006_gene514	NA	NA
UHGV-0171017_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0171017_4	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0171017_5	PHROG	phrog_6616	tail protein	tail
UHGV-0171017_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171017_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171017_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0171017_7	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0171017_7	COG	COG1511	NA	NA
UHGV-0171017_8	PHROG	phrog_706	NA	unknown function
UHGV-0171017_8	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0171017_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0171017_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0171017_8	Structural annotation	PF06854	NA	NA
UHGV-0171017_9	PHROG	phrog_11299	NA	unknown function
UHGV-0171017_9	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0171017_9	Structural annotation	PF10666	NA	NA
UHGV-0171017_10	PHROG	phrog_3099	NA	unknown function
UHGV-0171017_10	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0171017_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0171017_11	PHROG	phrog_3266	tail completion	connector
UHGV-0171017_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0171017_11	Structural annotation	PF12691	NA	NA
UHGV-0171017_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0171017_12	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0171017_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0171017_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0171017_12	Structural annotation	PF11114	NA	NA
UHGV-0171017_13	PHROG	phrog_3366	NA	unknown function
UHGV-0171017_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0171017_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0171017_14	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0171017_15	PHROG	phrog_267	major head protein	head and packaging
UHGV-0171017_15	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0171017_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171017_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0171017_16	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0171017_16	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0171017_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0171017_16	Structural annotation	PF06810	NA	NA
UHGV-0171017_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171017_17	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0171017_17	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0171017_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171017_17	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0171017_17	COG	COG2369	NA	NA
UHGV-0171017_17	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0171017_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171017_18	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0171017_18	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0171017_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171017_19	PHROG	phrog_1233	NA	unknown function
UHGV-0171017_19	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0171017_19	Structural annotation	PF13058	NA	NA
UHGV-0171017_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171017_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0171017_20	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0171017_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0171017_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0171017_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171017_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0171017_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171017_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171017_20	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171017_21	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0171017_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171017_22	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0171017_22	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0171017_22	Pfam	PF07374	NA	DUF1492
UHGV-0171017_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0171017_23	PHROG	phrog_5781	NA	unknown function
UHGV-0171017_23	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0171017_23	eggNOG-mapper	1048834.TC41_1868	NA	NA
UHGV-0171017_23	Pfam	PF14359	NA	DUF4406
UHGV-0171017_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0171017_24	PHROG	phrog_15609	NA	unknown function
UHGV-0171017_24	UniRef90	UniRef90_UPI00165E8F71	NA	NA
UHGV-0171017_24	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-0171017_24	Pfam	PF11300	NA	DUF3102
UHGV-0171017_24	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0171017_24	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0171017_25	PHROG	phrog_8470	NA	unknown function
UHGV-0171017_25	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-0171017_25	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0171017_25	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171017_25	Structural annotation	PF14284	NA	NA
UHGV-0171017_26	PHROG	phrog_38338	NA	unknown function
UHGV-0171017_26	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0171017_26	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0171017_27	KOfam	K03700	recU; recombination protein U	NA
UHGV-0171017_27	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171017_27	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0171017_27	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0171017_27	Pfam	PF03838	Recombination protein U	RecU
UHGV-0171017_27	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0171017_27	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0171017_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171017_28	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0171017_28	Structural annotation	PF21578	NA	NA
UHGV-0171017_31	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0171017_31	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0171017_31	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0171017_31	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0171017_31	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0171017_31	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0171017_31	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0171017_31	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0171017_33	PHROG	phrog_5663	NA	unknown function
UHGV-0171017_33	UniRef90	UniRef90_UPI001EDDD6D5	NA	NA
UHGV-0171017_33	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0171017_33	Pfam	PF10386	NA	DUF2441
UHGV-0171017_35	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-0171017_35	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0171017_35	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0171017_36	UniRef90	UniRef90_UPI000E31DAF9	helix-turn-helix domain-containing protein	NA
UHGV-0171017_36	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0171017_36	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0171017_36	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0171017_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171017_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171017_37	UniRef90	UniRef90_L7VL72	Putative transcriptional regulator	NA
UHGV-0171017_37	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0171017_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171017_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171017_37	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0171017_38	PHROG	phrog_1914	NA	unknown function
UHGV-0171017_38	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0171017_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0171017_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0171017_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0171017_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0171017_39	Structural annotation	PF18768, MF_02066, NF011886, COG5010	NA	NA
UHGV-0171017_40	Structural annotation	PF21227	NA	NA
UHGV-0171017_41	PHROG	phrog_5978	NA	unknown function
UHGV-0171017_41	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0171017_41	eggNOG-mapper	479437.Elen_3019	Filamentation induced by cAMP protein fic	NA
UHGV-0171017_41	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0171017_41	COG	COG3177	Fic family protein	NA
UHGV-0171017_41	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0171017_42	KOfam	K14059	int; integrase	NA
UHGV-0171017_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0171017_42	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0171017_42	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0171017_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171017_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171017_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171017_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA