UHGV-0171025

Genome information

Genome length 25,211 bps

CDS count 34

Completeness 63.04% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171025
vOTU ID	vOTU-028499
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_512553
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.54
Jumbo phage	No

Genome content
Genome length	25,211 bps
GC content	59.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	94.79%
Average CDS length	707.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171025_2	Structural annotation	PF18300	NA	NA
UHGV-0171025_3	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171025_3	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171025_3	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0171025_3	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0171025_4	PHROG	phrog_7566	NA	unknown function
UHGV-0171025_4	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0171025_4	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0171025_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171025_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171025_5	UniRef90	UniRef90_D1PJS6	Single-stranded DNA-binding protein	NA
UHGV-0171025_5	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0171025_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171025_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171025_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171025_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171025_5	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0171025_6	PHROG	phrog_15768	NA	unknown function
UHGV-0171025_6	UniRef90	UniRef90_A0A2E8DHN5	Helix-turn-helix domain-containing protein	NA
UHGV-0171025_6	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0171025_6	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0171025_6	Structural annotation	PF13730, MF_01909, NF041413, COG3355	NA	NA
UHGV-0171025_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0171025_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171025_7	UniRef90	UniRef90_UPI000C7A0A0E	ATP-binding protein	NA
UHGV-0171025_7	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0171025_7	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0171025_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0171025_7	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0171025_9	PHROG	phrog_1672	NA	unknown function
UHGV-0171025_11	PHROG	phrog_1233	NA	unknown function
UHGV-0171025_11	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0171025_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0171025_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171025_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0171025_13	UniRef90	UniRef90_A0A3D3FC70	PBSX family phage terminase large subunit	NA
UHGV-0171025_13	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0171025_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171025_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171025_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171025_13	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171025_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171025_14	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-0171025_14	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0171025_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171025_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171025_15	UniRef90	UniRef90_A0A2K9V3K1	Minor capsid protein	NA
UHGV-0171025_15	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0171025_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171025_15	COG	COG2369	NA	NA
UHGV-0171025_15	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-0171025_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0171025_17	UniRef90	UniRef90_R5GVJ3	Bacteriophage SPP1 complete nucleotide sequence	NA
UHGV-0171025_17	eggNOG-mapper	536232.CLM_2525	Phage minor structural protein GP20	NA
UHGV-0171025_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0171025_17	Structural annotation	PF06810	NA	NA
UHGV-0171025_18	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0171025_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171025_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0171025_20	PHROG	phrog_3366	NA	unknown function
UHGV-0171025_20	eggNOG-mapper	1280692.AUJL01000004_gene843	NA	NA
UHGV-0171025_20	Pfam	PF20536	NA	DUF6751
UHGV-0171025_20	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0171025_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0171025_21	UniRef90	UniRef90_A0A315YQZ5	Minor capsid protein	NA
UHGV-0171025_21	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0171025_21	Structural annotation	PF11114	NA	NA
UHGV-0171025_22	PHROG	phrog_3266	tail completion	connector
UHGV-0171025_22	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0171025_22	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0171025_22	Structural annotation	PF12691	NA	NA
UHGV-0171025_23	PHROG	phrog_3099	NA	unknown function
UHGV-0171025_23	UniRef90	UniRef90_A0A0A8WJB7	S-l_SbsC_C domain-containing protein	NA
UHGV-0171025_23	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0171025_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0171025_24	PHROG	phrog_4450	NA	unknown function
UHGV-0171025_24	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-0171025_24	Pfam	PF20378	NA	DUF6673
UHGV-0171025_24	Structural annotation	PF10666	NA	NA
UHGV-0171025_25	PHROG	phrog_706	NA	unknown function
UHGV-0171025_25	UniRef90	UniRef90_A0A8J6LUV6	Bacteriophage Gp15 family protein	NA
UHGV-0171025_25	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-0171025_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0171025_25	Structural annotation	PF06854	NA	NA
UHGV-0171025_26	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0171025_26	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0171025_26	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0171025_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171025_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171025_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0171025_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0171025_27	PHROG	phrog_36410	NA	unknown function
UHGV-0171025_27	UniRef90	UniRef90_UPI0011065E28	phage tail family protein	NA
UHGV-0171025_27	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0171025_27	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0171025_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0171025_28	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0171025_28	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0171025_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0171025_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171025_29	PHROG	phrog_9534	head protein	head and packaging
UHGV-0171025_29	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0171025_30	eggNOG-mapper	411468.CLOSCI_00536	NA	NA
UHGV-0171025_30	Structural annotation	PF13753, NF009633	NA	NA
UHGV-0171025_31	PHROG	phrog_11262	tail protein	tail
UHGV-0171025_31	UniRef90	UniRef90_A0A416BWU4	FGE-sulfatase domain-containing protein	NA
UHGV-0171025_31	eggNOG-mapper	411468.CLOSCI_00535	Sulfatase-modifying factor enzyme 1	NA
UHGV-0171025_31	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0171025_31	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-0171025_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0171025_32	PHROG	phrog_291	endolysin	lysis
UHGV-0171025_32	UniRef90	UniRef90_D1PR98	Glycosyl hydrolase family 25	NA
UHGV-0171025_32	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0171025_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171025_32	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0171025_32	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0171025_33	PHROG	phrog_199	holin	lysis
UHGV-0171025_33	UniRef90	UniRef90_R9N6H8	Toxin secretion/phage lysis holin	NA
UHGV-0171025_33	eggNOG-mapper	1235800.C819_02219	Bacteriophage holin family	NA
UHGV-0171025_33	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171025_33	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171025_33	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171025_33	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171025_34	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0171025_34	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171025_34	UniRef90	UniRef90_A0A564U3P6	DNA polymerase III PolC-type	NA
UHGV-0171025_34	eggNOG-mapper	411471.SUBVAR_05190	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0171025_34	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0171025_34	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0171025_34	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0171025_34	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0171025_34	HAMAP	MF_00356	DNA polymerase III PolC-type [polC]	NA