UHGV-0171179

Genome information

Genome length 26,976 bps

CDS count 37

Completeness 75.49% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171179
vOTU ID	vOTU-028504
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539979
BioSample	SAMN06328501
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.55
Jumbo phage	No

Genome content
Genome length	26,976 bps
GC content	41.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.87%
Average CDS length	665.35 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171179_2	UniRef90	UniRef90_A0A411ZPE0	XRE family transcriptional regulator	NA
UHGV-0171179_2	eggNOG-mapper	411470.RUMGNA_01172	NA	NA
UHGV-0171179_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171179_2	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0171179_3	PHROG	phrog_24764	NA	unknown function
UHGV-0171179_3	UniRef90	UniRef90_A0A373CN96	TnpV protein	NA
UHGV-0171179_3	eggNOG-mapper	585394.RHOM_13390	Transposon-encoded protein TnpV	NA
UHGV-0171179_3	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0171179_3	Structural annotation	PF14198	NA	NA
UHGV-0171179_4	UniRef90	UniRef90_A0A1I0XGE0	23S rRNA (Uracil1939-C5)-methyltransferase	NA
UHGV-0171179_4	eggNOG-mapper	411469.EUBHAL_02103	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family	NA
UHGV-0171179_4	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA
UHGV-0171179_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171179_5	PHROG	phrog_435	endolysin	lysis
UHGV-0171179_5	UniRef90	UniRef90_A0A4R2LL56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171179_5	eggNOG-mapper	478749.BRYFOR_05528	N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family	NA
UHGV-0171179_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171179_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171179_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0171179_6	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0171179_6	UniRef90	UniRef90_A0A7C6P3D5	Rha family transcriptional regulator	NA
UHGV-0171179_6	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0171179_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0171179_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0171179_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0171179_6	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0171179_7	PHROG	phrog_199	holin	lysis
UHGV-0171179_7	UniRef90	UniRef90_UPI0006D0FC08	phage holin family protein	NA
UHGV-0171179_7	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0171179_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171179_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171179_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171179_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171179_8	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0171179_8	UniRef90	UniRef90_A0A0M2NHB1	Neck appendage protein	NA
UHGV-0171179_8	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0171179_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0171179_10	eggNOG-mapper	476272.RUMHYD_02869	NA	NA
UHGV-0171179_10	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0171179_11	PHROG	phrog_32322	NA	unknown function
UHGV-0171179_11	UniRef90	UniRef90_UPI0011DD8E8A	PF13754 domain-containing protein	NA
UHGV-0171179_11	Pfam	PF13754	NA	Big_3_4
UHGV-0171179_12	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0171179_12	PHROG	phrog_11157	NA	unknown function
UHGV-0171179_12	UniRef90	UniRef90_A0A1M5CXW0	Big_13 domain-containing protein	NA
UHGV-0171179_12	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0171179_12	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0171179_12	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0171179_12	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0171179_12	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0171179_13	PHROG	phrog_21765	NA	unknown function
UHGV-0171179_13	COG	COG4926	Phage-related protein	NA
UHGV-0171179_14	PHROG	phrog_11037	NA	unknown function
UHGV-0171179_14	UniRef90	UniRef90_A0A7G5N2U5	Peptidase M23	NA
UHGV-0171179_14	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0171179_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0171179_14	Pfam	PF05257	CHAP domain	CHAP
UHGV-0171179_14	COG	COG3942	Surface antigen	NA
UHGV-0171179_14	Structural annotation	PF18013, PF00877, NF006360, COG3942	NA	NA
UHGV-0171179_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171179_15	UniRef90	UniRef90_A0A7U9R9D6	Prophage_tail domain-containing protein	NA
UHGV-0171179_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0171179_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171179_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171179_15	COG	COG4926	Phage-related protein	NA
UHGV-0171179_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171179_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171179_16	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0171179_16	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0171179_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171179_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0171179_17	PHROG	phrog_23464	NA	unknown function
UHGV-0171179_17	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0171179_17	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0171179_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0171179_17	Structural annotation	COG5280	NA	NA
UHGV-0171179_18	PHROG	phrog_709	NA	unknown function
UHGV-0171179_18	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0171179_18	Structural annotation	PF11836	NA	NA
UHGV-0171179_19	PHROG	phrog_88	major tail protein	tail
UHGV-0171179_19	UniRef90	UniRef90_A0A7G9G6Y7	Phage tail protein	NA
UHGV-0171179_19	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0171179_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0171179_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0171179_20	PHROG	phrog_78	tail terminator	connector
UHGV-0171179_20	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0171179_20	Structural annotation	PF20765	NA	NA
UHGV-0171179_21	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0171179_21	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-0171179_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171179_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0171179_22	PHROG	phrog_19734	NA	unknown function
UHGV-0171179_22	UniRef90	UniRef90_A0A414B852	Head-tail adaptor protein	NA
UHGV-0171179_22	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0171179_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171179_23	PHROG	phrog_749	NA	unknown function
UHGV-0171179_23	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0171179_23	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0171179_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171179_24	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0171179_24	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0171179_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171179_24	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0171179_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171179_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171179_24	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171179_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171179_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171179_25	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0171179_25	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0171179_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171179_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171179_25	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0171179_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171179_26	UniRef90	UniRef90_A0A4V2UQ51	HK97 family phage portal protein	NA
UHGV-0171179_26	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0171179_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171179_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171179_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171179_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171179_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171179_27	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0171179_27	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0171179_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171179_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171179_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171179_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171179_28	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0171179_28	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0171179_28	eggNOG-mapper	610130.Closa_0740	NA	NA
UHGV-0171179_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171179_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0171179_29	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0171179_30	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0171179_30	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0171179_30	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0171179_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0171179_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0171179_32	UniRef90	UniRef90_UPI00164C8168	ParA family protein	NA
UHGV-0171179_32	eggNOG-mapper	397945.Aave_2377	COG1192 ATPases involved in chromosome partitioning	NA
UHGV-0171179_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0171179_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0171179_32	Structural annotation	PF13614, MF_00355, TIGR03453, COG1192	NA	NA
UHGV-0171179_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171179_34	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0171179_34	Structural annotation	PF02996	NA	NA
UHGV-0171179_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0171179_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0171179_37	UniRef90	UniRef90_A0A448W1P4	Chromosome-partitioning protein parB	NA
UHGV-0171179_37	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0171179_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0171179_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0171179_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0171179_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA