UHGV-0171213

Genome information

Genome length 27,186 bps

CDS count 42

Completeness 68.09% (medium-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171213
vOTU ID	vOTU-028507
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539346
BioSample	SAMN06328471
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.92
Jumbo phage	No

Genome content
Genome length	27,186 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.82%
Average CDS length	599.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171213_1	KOfam	K07584	NA	NA
UHGV-0171213_1	PHROG	phrog_4478	peptidase	other
UHGV-0171213_1	UniRef90	UniRef90_A0A416Z2U9	Ribosomal-processing cysteine protease Prp	NA
UHGV-0171213_1	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0171213_1	COG	COG2868	NA	NA
UHGV-0171213_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171213_2	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-0171213_2	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0171213_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171213_3	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0171213_3	UniRef90	UniRef90_A0A2V2D4K5	Terminase-like family protein	NA
UHGV-0171213_3	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0171213_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171213_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171213_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171213_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0171213_4	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0171213_4	UniRef90	UniRef90_A0A3A9GB54	Phage portal protein	NA
UHGV-0171213_4	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0171213_4	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0171213_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0171213_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171213_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0171213_7	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0171213_7	UniRef90	UniRef90_A0A843HIF4	HDIG domain-containing protein	NA
UHGV-0171213_7	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0171213_7	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0171213_7	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0171213_8	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0171213_8	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0171213_9	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0171213_11	PHROG	phrog_15077	NA	unknown function
UHGV-0171213_11	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0171213_11	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0171213_11	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0171213_12	PHROG	phrog_8470	NA	unknown function
UHGV-0171213_12	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0171213_12	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0171213_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171213_12	Structural annotation	PF14284	NA	NA
UHGV-0171213_13	PHROG	phrog_4433	NA	unknown function
UHGV-0171213_13	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0171213_13	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171213_13	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0171213_14	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0171213_16	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0171213_16	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0171213_18	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0171213_18	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171213_18	UniRef90	UniRef90_A0A1C5TF07	NA	NA
UHGV-0171213_18	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0171213_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0171213_18	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0171213_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0171213_19	PHROG	phrog_24368	NA	unknown function
UHGV-0171213_19	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0171213_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171213_20	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0171213_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0171213_21	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0171213_21	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0171213_21	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0171213_21	eggNOG-mapper	1163389.OOM_1312	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0171213_21	Pfam	PF00075	RNase H	RNase_H
UHGV-0171213_21	COG	COG0328	Ribonuclease HI	NA
UHGV-0171213_21	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0171213_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171213_22	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0171213_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0171213_26	UniRef90	UniRef90_UPI0018F716FF	helix-turn-helix domain-containing protein	NA
UHGV-0171213_26	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0171213_26	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0171213_27	Structural annotation	PF09035	NA	NA
UHGV-0171213_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0171213_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0171213_29	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0171213_29	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0171213_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171213_29	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171213_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171213_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171213_31	UniRef90	UniRef90_A0A3R6QMJ7	XRE family transcriptional regulator	NA
UHGV-0171213_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171213_31	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0171213_31	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0171213_33	KOfam	K14059	int; integrase	NA
UHGV-0171213_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0171213_33	UniRef90	UniRef90_A0A318EPS8	Site-specific recombinase XerD	NA
UHGV-0171213_33	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0171213_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171213_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171213_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171213_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0171213_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171213_34	PHROG	phrog_435	endolysin	lysis
UHGV-0171213_34	UniRef90	UniRef90_A0A416Z2X7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171213_34	eggNOG-mapper	1235800.C819_02218	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0171213_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171213_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171213_34	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0171213_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0171213_35	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0171213_35	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0171213_35	Structural annotation	PF14359	NA	NA
UHGV-0171213_36	PHROG	phrog_199	holin	lysis
UHGV-0171213_36	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-0171213_36	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0171213_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171213_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171213_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171213_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171213_37	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-0171213_38	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-0171213_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0171213_39	PHROG	phrog_216	integrase	integration and excision
UHGV-0171213_39	UniRef90	UniRef90_A0A7U9SV36	Tyrosine recombinase XerD	NA
UHGV-0171213_39	eggNOG-mapper	1235790.C805_00610	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0171213_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171213_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0171213_41	PHROG	phrog_19280	NA	unknown function
UHGV-0171213_41	UniRef90	UniRef90_A0A3R6TVQ8	NA	NA
UHGV-0171213_41	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0171213_41	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0171213_41	Structural annotation	PF10651, TIGR02781, COG2372	NA	NA
UHGV-0171213_42	KOfam	K18234	vat; virginiamycin A acetyltransferase [EC:2.3.1.-]	NA
UHGV-0171213_42	PHROG	phrog_22978	NA	unknown function
UHGV-0171213_42	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0171213_42	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep