UHGV-0171316

Genome information

Genome length 17,341 bps

CDS count 21

Completeness 96.53% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171316
vOTU ID	vOTU-063772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574717
BioSample	SAMN07449048
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.59
Jumbo phage	No

Genome content
Genome length	17,341 bps
GC content	53.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	93.35%
Average CDS length	773.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171316_2	eggNOG-mapper	1341695.BBOMB_1024	NA	NA
UHGV-0171316_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171316_3	PHROG	phrog_19265	NA	unknown function
UHGV-0171316_3	UniRef90	UniRef90_A0A080N6H9	N-acetylmuramoyl-L-alanine amidase family protein	NA
UHGV-0171316_3	eggNOG-mapper	1341695.BBOMB_1025	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171316_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171316_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0171316_3	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0171316_4	PHROG	phrog_199	holin	lysis
UHGV-0171316_4	UniRef90	UniRef90_U6S4E3	Toxin secretion/phage lysis holin	NA
UHGV-0171316_4	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0171316_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171316_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171316_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171316_5	PHROG	phrog_2150	terminase	head and packaging
UHGV-0171316_5	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0171316_5	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0171316_5	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0171316_5	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171316_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0171316_6	Structural annotation	TIGR02219	NA	NA
UHGV-0171316_7	Structural annotation	PF08931	NA	NA
UHGV-0171316_10	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0171316_10	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0171316_10	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0171316_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0171316_11	UniRef90	UniRef90_I3PV47	Connector protein	NA
UHGV-0171316_11	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0171316_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0171316_11	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0171316_12	PHROG	phrog_2248	tail protein	tail
UHGV-0171316_12	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0171316_12	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0171316_12	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0171316_12	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0171316_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0171316_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0171316_13	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0171316_13	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0171316_13	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0171316_13	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0171316_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0171316_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171316_15	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0171316_15	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0171316_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0171316_15	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0171316_16	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0171316_17	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171316_17	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0171316_17	Structural annotation	PF17427	NA	NA
UHGV-0171316_18	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-0171316_20	Structural annotation	PF11680	NA	NA