UHGV-0171329

Genome information

Genome length 27,679 bps

CDS count 43

Completeness 73.69% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171329
vOTU ID	vOTU-028512
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580932
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.95
Jumbo phage	No

Genome content
Genome length	27,679 bps
GC content	40.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	95.64%
Average CDS length	621.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171329_1	PHROG	phrog_9773	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0171329_1	eggNOG-mapper	1034347.CAHJ01000092_gene1617	NA	NA
UHGV-0171329_2	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171329_2	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0171329_2	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0171329_2	Pfam	PF06356	NA	DUF1064
UHGV-0171329_2	Structural annotation	PF06356, MF_00130, NF033179	NA	NA
UHGV-0171329_3	PHROG	phrog_7566	NA	unknown function
UHGV-0171329_3	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0171329_3	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0171329_4	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0171329_4	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0171329_4	UniRef90	UniRef90_A0A2P8EI12	dUTP pyrophosphatase	NA
UHGV-0171329_4	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0171329_4	Pfam	PF00692	dUTPase	dUTPase
UHGV-0171329_4	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0171329_4	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0171329_4	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0171329_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171329_5	eggNOG-mapper	626523.GCWU000342_01037	NA	NA
UHGV-0171329_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0171329_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171329_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171329_6	UniRef90	UniRef90_A0A200HT59	Single-stranded DNA-binding protein	NA
UHGV-0171329_6	eggNOG-mapper	1235796.C815_00133	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0171329_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171329_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171329_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171329_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171329_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171329_7	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171329_7	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0171329_7	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0171329_7	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0171329_8	PHROG	phrog_6244	NA	unknown function
UHGV-0171329_8	eggNOG-mapper	1399942.U3PIX9_9CAUD	NA	NA
UHGV-0171329_8	Structural annotation	PF05565	NA	NA
UHGV-0171329_9	Structural annotation	PF19157	NA	NA
UHGV-0171329_10	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171329_10	UniRef90	UniRef90_A0A366DNY1	ERF superfamily protein	NA
UHGV-0171329_10	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0171329_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0171329_10	Structural annotation	PF04404	NA	NA
UHGV-0171329_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0171329_12	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0171329_12	UniRef90	UniRef90_UPI00195F9AA7	helix-turn-helix transcriptional regulator	NA
UHGV-0171329_12	eggNOG-mapper	1380408.AVGH01000013_gene708	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171329_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171329_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171329_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171329_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171329_13	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0171329_13	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0171329_13	UniRef90	UniRef90_R6AML4	XRE family transcriptional regulator	NA
UHGV-0171329_13	eggNOG-mapper	224719.Abm4_1037	IrrE N-terminal-like domain	NA
UHGV-0171329_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171329_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171329_13	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0171329_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0171329_15	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171329_15	PHROG	phrog_95	integrase	integration and excision
UHGV-0171329_15	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0171329_15	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0171329_15	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171329_15	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171329_15	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171329_15	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171329_15	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0171329_16	PHROG	phrog_372	tail protein	tail
UHGV-0171329_16	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-0171329_16	eggNOG-mapper	1123315.AUIP01000001_gene1436	NA	NA
UHGV-0171329_16	Pfam	PF05895	NA	DUF859
UHGV-0171329_16	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0171329_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171329_17	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0171329_17	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0171329_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171329_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171329_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171329_18	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0171329_18	Structural annotation	NF040910	NA	NA
UHGV-0171329_19	Structural annotation	PF10618	NA	NA
UHGV-0171329_20	PHROG	phrog_24267	NA	unknown function
UHGV-0171329_20	UniRef90	UniRef90_B1HUA6	Phage tail collar	NA
UHGV-0171329_20	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0171329_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0171329_20	Structural annotation	COG4675	NA	NA
UHGV-0171329_21	Structural annotation	NF033677	NA	NA
UHGV-0171329_24	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0171329_24	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0171329_26	PHROG	phrog_1084	NA	unknown function
UHGV-0171329_26	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0171329_26	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0171329_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171329_27	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0171329_27	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0171329_27	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0171329_28	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0171329_28	UniRef90	UniRef90_A0A3S4X6P5	Phage-related protein	NA
UHGV-0171329_28	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0171329_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0171329_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0171329_29	PHROG	phrog_2115	tail protein	tail
UHGV-0171329_29	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0171329_29	Structural annotation	PF11836	NA	NA
UHGV-0171329_30	PHROG	phrog_88	major tail protein	tail
UHGV-0171329_30	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0171329_30	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0171329_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0171329_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0171329_31	PHROG	phrog_78	tail terminator	connector
UHGV-0171329_31	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-0171329_31	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-0171329_31	Structural annotation	PF05657	NA	NA
UHGV-0171329_32	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0171329_32	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0171329_32	Structural annotation	TIGR01725	NA	NA
UHGV-0171329_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171329_33	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0171329_33	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0171329_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171329_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171329_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0171329_34	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0171329_34	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0171329_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171329_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171329_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171329_35	UniRef90	UniRef90_A0A168E1E5	Phage capsid family protein	NA
UHGV-0171329_35	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0171329_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171329_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171329_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171329_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171329_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171329_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171329_36	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0171329_36	eggNOG-mapper	536232.CLM_2932	Belongs to the peptidase S14 family	NA
UHGV-0171329_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171329_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171329_36	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0171329_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171329_37	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0171329_37	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0171329_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171329_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171329_37	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171329_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171329_38	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0171329_38	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0171329_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171329_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171329_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171329_39	PHROG	phrog_13845	NA	unknown function
UHGV-0171329_39	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0171329_39	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0171329_40	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0171329_40	PHROG	phrog_9677	NA	unknown function
UHGV-0171329_40	UniRef90	UniRef90_UPI001F478CC1	UDP-galactopyranose mutase	NA
UHGV-0171329_40	eggNOG-mapper	568816.Acin_0989	UDP-galactopyranose mutase	NA
UHGV-0171329_40	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0171329_40	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0171329_40	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0171329_40	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0171329_40	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0171329_41	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0171329_41	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0171329_41	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0171329_41	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0171329_41	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0171329_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0171329_42	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0171329_42	UniRef90	UniRef90_A0A2P1CCG3	Adenine-specific methyltransferase	NA
UHGV-0171329_42	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0171329_42	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0171329_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0171329_42	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA