UHGV-0171414

Genome information

Genome length 41,730 bps

CDS count 62

Completeness 83.52% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171414
vOTU ID	vOTU-028518
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589928
BioSample	SAMN09781727
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.27
Jumbo phage	No

Genome content
Genome length	41,730 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.25%
Average CDS length	630.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171414_1	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0171414_2	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0171414_2	UniRef90	UniRef90_UPI000A7B949E	NA	NA
UHGV-0171414_2	eggNOG-mapper	357809.Cphy_2880	Belongs to the UPF0296 family	NA
UHGV-0171414_2	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0171414_2	COG	COG2052	NA	NA
UHGV-0171414_2	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0171414_3	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0171414_3	PHROG	phrog_5889	NA	unknown function
UHGV-0171414_3	UniRef90	UniRef90_A0A417K786	HD domain-containing protein	NA
UHGV-0171414_3	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0171414_3	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0171414_3	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0171414_4	PHROG	phrog_21026	NA	unknown function
UHGV-0171414_5	PHROG	phrog_2396	NA	unknown function
UHGV-0171414_5	UniRef90	UniRef90_A0A7L8YSB3	aGPT-Pplase1 domain-containing protein	NA
UHGV-0171414_5	eggNOG-mapper	29486.NJ56_14910	NA	NA
UHGV-0171414_5	Pfam	PF18723	5-hmdU DNA kinase, helical domain	HMUDK_hel
UHGV-0171414_5	Structural annotation	PF18723	NA	NA
UHGV-0171414_7	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0171414_7	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0171414_7	UniRef90	UniRef90_UPI0013D7BB2A	ComE operon protein 2	NA
UHGV-0171414_7	eggNOG-mapper	1552123.EP57_06350	MafB19-like deaminase	NA
UHGV-0171414_7	PADLOC	dCTPase	NA	NA
UHGV-0171414_7	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0171414_7	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0171414_7	Structural annotation	PF00383, MF_00972, TIGR02571, COG2131	NA	NA
UHGV-0171414_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171414_8	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0171414_9	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0171414_9	UniRef90	UniRef90_C6LKB5	Phage/plasmid primase, P4 family domain protein	NA
UHGV-0171414_9	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0171414_9	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0171414_9	Pfam	PF19263	NA	DUF5906
UHGV-0171414_9	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0171414_9	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0171414_9	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0171414_9	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0171414_10	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171414_10	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0171414_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0171414_13	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0171414_13	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171414_13	UniRef90	UniRef90_A0A249XYV4	DNA polymerase I	NA
UHGV-0171414_13	eggNOG-mapper	1340829.S5Y5D9_9CAUD	DNA polymerase family A	NA
UHGV-0171414_13	PADLOC	drt-cluster58	DRT	DRT
UHGV-0171414_13	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0171414_13	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0171414_13	Structural annotation	PF00476, PF01612, MF_04101, NF011539, COG0749	NA	NA
UHGV-0171414_14	Structural annotation	PF18339, NF037951, COG1862	NA	NA
UHGV-0171414_15	KOfam	K16899	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	NA
UHGV-0171414_15	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171414_15	UniRef90	UniRef90_A0A3M2CC25	PD-(D/E)XK nuclease family protein	NA
UHGV-0171414_15	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0171414_15	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0171414_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171414_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0171414_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG2874	NA	NA
UHGV-0171414_17	PHROG	phrog_3724	NA	unknown function
UHGV-0171414_17	UniRef90	UniRef90_A0A7C2QDN5	NA	NA
UHGV-0171414_17	Pfam	PF05037	NA	DUF669
UHGV-0171414_17	Structural annotation	PF05037, MF_00292, NF003080, COG2053	NA	NA
UHGV-0171414_18	PHROG	phrog_3271	NA	unknown function
UHGV-0171414_18	UniRef90	UniRef90_A0A497PJJ2	aGPT-Pplase2 domain-containing protein	NA
UHGV-0171414_18	Structural annotation	PF18724, NF009788	NA	NA
UHGV-0171414_19	PHROG	phrog_800	terminase small subunit	head and packaging
UHGV-0171414_19	UniRef90	UniRef90_A0A7D3UYA3	Thymidylate kinase	NA
UHGV-0171414_19	eggNOG-mapper	462590.A9J510_BPPYU	kinase activity	NA
UHGV-0171414_19	Pfam	PF18748	5-hmdU DNA kinase	HMUDK_HMUD1
UHGV-0171414_19	Structural annotation	PF18748, MF_00109, NF005253, COG4639	NA	NA
UHGV-0171414_20	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0171414_20	Structural annotation	PF20691, MF_02068, NF038299, COG1216	NA	NA
UHGV-0171414_22	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0171414_22	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0171414_22	UniRef90	UniRef90_A0A349YPD8	Thymidylate synthase	NA
UHGV-0171414_22	eggNOG-mapper	1084719.G3MA60_9CAUD	Thymidylate synthase	NA
UHGV-0171414_22	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0171414_22	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0171414_24	PHROG	phrog_24386	NA	unknown function
UHGV-0171414_24	eggNOG-mapper	1408312.JNJS01000008_gene657	phosphatase activity	NA
UHGV-0171414_24	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0171414_25	UniRef90	UniRef90_A0A7C5BPT7	VRR-NUC domain-containing protein	NA
UHGV-0171414_25	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0171414_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0171414_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171414_27	UniRef90	UniRef90_A0A1V5E5D6	Helicase ATP-binding domain-containing protein	NA
UHGV-0171414_27	eggNOG-mapper	1126885.I3VYY6_9CAUD	helicase activity	NA
UHGV-0171414_27	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0171414_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0171414_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171414_27	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0171414_30	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0171414_31	UniRef90	UniRef90_A0A349YP35	BclA_C domain-containing protein	NA
UHGV-0171414_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171414_32	PHROG	phrog_16490	NA	unknown function
UHGV-0171414_32	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0171414_33	PHROG	phrog_21718	NA	unknown function
UHGV-0171414_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171414_38	PHROG	phrog_7698	endolysin	lysis
UHGV-0171414_38	UniRef90	UniRef90_A0A2A7A552	SH3b domain-containing protein	NA
UHGV-0171414_38	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171414_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171414_38	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0171414_38	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG3807	NA	NA
UHGV-0171414_39	PHROG	phrog_297	holin	lysis
UHGV-0171414_39	UniRef90	UniRef90_A0A7X5DBM7	Phage holin	NA
UHGV-0171414_39	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0171414_39	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0171414_39	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0171414_39	COG	COG5546	NA	NA
UHGV-0171414_39	Structural annotation	COG5546	NA	NA
UHGV-0171414_41	Structural annotation	PF11192	NA	NA
UHGV-0171414_42	PHROG	phrog_9534	head protein	head and packaging
UHGV-0171414_42	eggNOG-mapper	431943.CKL_2628	COG NOG18825 non supervised orthologous group	NA
UHGV-0171414_42	Structural annotation	PF20747	NA	NA
UHGV-0171414_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0171414_43	UniRef90	UniRef90_UPI001E4BD4DF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0171414_43	eggNOG-mapper	1145276.T479_16190	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0171414_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0171414_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171414_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171414_44	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-0171414_44	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0171414_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0171414_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171414_44	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0171414_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0171414_45	eggNOG-mapper	1120978.KB894081_gene118	Phage tail tape measure protein	NA
UHGV-0171414_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171414_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171414_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0171414_45	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0171414_46	PHROG	phrog_6280	NA	unknown function
UHGV-0171414_46	UniRef90	UniRef90_A0A1J0GN47	Esterase	NA
UHGV-0171414_46	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0171414_47	PHROG	phrog_6686	tail tube protein	tail
UHGV-0171414_47	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0171414_47	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0171414_47	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0171414_48	PHROG	phrog_7585	NA	unknown function
UHGV-0171414_48	eggNOG-mapper	1304880.JAGB01000002_gene2212	NA	NA
UHGV-0171414_48	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0171414_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171414_49	UniRef90	UniRef90_A0A7T8EP39	Minor capsid protein	NA
UHGV-0171414_49	eggNOG-mapper	697281.Mahau_0578	Phage virion morphogenesis	NA
UHGV-0171414_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171414_49	COG	COG5005	NA	NA
UHGV-0171414_49	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0171414_50	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171414_51	PHROG	phrog_4020	NA	unknown function
UHGV-0171414_53	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171414_53	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0171414_53	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0171414_53	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171414_53	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0171414_54	PHROG	phrog_909	major head protein	head and packaging
UHGV-0171414_54	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0171414_54	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0171414_54	Structural annotation	PF02924	NA	NA
UHGV-0171414_55	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0171414_55	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-0171414_55	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0171414_57	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0171414_57	UniRef90	UniRef90_UPI001C38455C	phage head morphogenesis protein	NA
UHGV-0171414_57	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0171414_57	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171414_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171414_59	UniRef90	UniRef90_UPI0008331C88	phage portal protein	NA
UHGV-0171414_59	eggNOG-mapper	59241.E7DNA2_BPDP1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171414_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171414_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0171414_60	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171414_60	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0171414_60	UniRef90	UniRef90_UPI0008366FD4	PBSX family phage terminase large subunit	NA
UHGV-0171414_60	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0171414_60	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171414_60	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0171414_60	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171414_60	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171414_60	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171414_61	PHROG	phrog_8680	NA	unknown function
UHGV-0171414_61	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0171414_61	Pfam	PF14386	NA	DUF4417
UHGV-0171414_61	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0171414_62	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0171414_62	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0171414_62	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0171414_62	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0171414_62	Structural annotation	PF16677	NA	NA