UHGV-0171456

Genome information

Genome length 31,681 bps

CDS count 50

Completeness 86.21% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171456
vOTU ID	vOTU-028523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_565011
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.77
Jumbo phage	No

Genome content
Genome length	31,681 bps
GC content	56.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	95.35%
Average CDS length	607.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171456_1	eggNOG-mapper	1235755.ANAM01000006_gene2372	COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0171456_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171456_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171456_2	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0171456_2	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0171456_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171456_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171456_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171456_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171456_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171456_3	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0171456_3	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0171456_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171456_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171456_3	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0171456_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171456_4	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0171456_4	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0171456_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171456_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171456_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171456_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171456_5	PHROG	phrog_5223	neck protein	connector
UHGV-0171456_5	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0171456_5	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0171456_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0171456_6	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-0171456_6	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0171456_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171456_6	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171456_6	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171456_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171456_7	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0171456_7	Structural annotation	PF05657	NA	NA
UHGV-0171456_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171456_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171456_8	Structural annotation	TIGR01725	NA	NA
UHGV-0171456_9	PHROG	phrog_88	major tail protein	tail
UHGV-0171456_9	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0171456_9	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0171456_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0171456_9	COG	COG5492	NA	NA
UHGV-0171456_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0171456_10	Structural annotation	PF11836	NA	NA
UHGV-0171456_11	PHROG	phrog_33680	NA	unknown function
UHGV-0171456_11	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0171456_11	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0171456_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0171456_11	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0171456_12	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0171456_12	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0171456_12	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0171456_12	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0171456_13	PHROG	phrog_26795	NA	unknown function
UHGV-0171456_13	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0171456_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0171456_14	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0171456_15	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0171456_15	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-0171456_15	eggNOG-mapper	1151292.QEW_0668	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0171456_15	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0171456_15	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171456_16	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0171456_16	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0171456_16	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0171456_16	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0171456_16	Structural annotation	PF13350, PF18998, PF17425, TIGR01244, COG2365	NA	NA
UHGV-0171456_17	PHROG	phrog_937	hemolysin	other
UHGV-0171456_17	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0171456_19	PHROG	phrog_918	NA	unknown function
UHGV-0171456_19	UniRef90	UniRef90_UPI001158CAD9	NA	NA
UHGV-0171456_19	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0171456_19	Pfam	PF19791	NA	DUF6275
UHGV-0171456_19	Structural annotation	PF19791	NA	NA
UHGV-0171456_20	PHROG	phrog_13256	NA	unknown function
UHGV-0171456_20	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0171456_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171456_21	PHROG	phrog_1794	amidase	lysis
UHGV-0171456_21	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171456_21	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0171456_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171456_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171456_21	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0171456_22	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0171456_22	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0171456_23	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0171456_23	PHROG	phrog_9764	NA	unknown function
UHGV-0171456_23	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0171456_23	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0171456_23	PADLOC	AbiQ	AbiQ	Abi
UHGV-0171456_23	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0171456_23	Structural annotation	PF13958	NA	NA
UHGV-0171456_26	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0171456_26	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0171456_27	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171456_27	PHROG	phrog_95	integrase	integration and excision
UHGV-0171456_27	UniRef90	UniRef90_UPI0019572FB3	recombinase family protein	NA
UHGV-0171456_27	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0171456_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171456_27	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171456_27	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171456_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171456_27	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0171456_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171456_28	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0171456_29	eggNOG-mapper	1236902.ANAS01000009_gene2676	TM2 domain	NA
UHGV-0171456_29	COG	COG2314	NA	NA
UHGV-0171456_31	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0171456_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171456_31	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0171456_31	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0171456_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171456_31	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171456_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171456_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171456_37	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0171456_37	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0171456_38	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0171456_39	Structural annotation	PF05082	NA	NA
UHGV-0171456_42	PHROG	phrog_36399	NA	unknown function
UHGV-0171456_42	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0171456_43	PHROG	phrog_8470	NA	unknown function
UHGV-0171456_43	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0171456_43	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0171456_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171456_43	Structural annotation	PF14284	NA	NA
UHGV-0171456_44	PHROG	phrog_15609	NA	unknown function
UHGV-0171456_44	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0171456_44	Pfam	PF11300	NA	DUF3102
UHGV-0171456_44	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0171456_44	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0171456_45	Structural annotation	NF041588	NA	NA
UHGV-0171456_46	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171456_46	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0171456_46	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0171456_47	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171456_47	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0171456_47	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0171456_47	Pfam	PF06356	NA	DUF1064
UHGV-0171456_47	Structural annotation	PF06356	NA	NA