UHGV-0171458

Genome information

Genome length 41,208 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171458
vOTU ID	vOTU-046415
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_564996
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.43
Jumbo phage	No

Genome content
Genome length	41,208 bps
GC content	53.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.32%
Average CDS length	532.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171458_1	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0171458_1	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0171458_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171458_2	PHROG	phrog_4433	NA	unknown function
UHGV-0171458_2	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0171458_2	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171458_2	Structural annotation	NF007410	NA	NA
UHGV-0171458_4	PHROG	phrog_22529	NA	unknown function
UHGV-0171458_4	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0171458_4	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0171458_4	Pfam	PF06725	3D domain	3D
UHGV-0171458_4	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0171458_4	Structural annotation	COG3584	NA	NA
UHGV-0171458_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171458_7	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0171458_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171458_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0171458_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171458_8	UniRef90	UniRef90_R6G3I6	DNA-binding helix-turn-helix protein	NA
UHGV-0171458_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171458_8	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171458_12	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0171458_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171458_12	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0171458_13	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171458_13	PHROG	phrog_95	integrase	integration and excision
UHGV-0171458_13	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0171458_13	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0171458_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171458_13	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171458_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171458_13	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0171458_14	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0171458_15	PHROG	phrog_28802	NA	unknown function
UHGV-0171458_15	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0171458_15	Structural annotation	PF12510	NA	NA
UHGV-0171458_16	PHROG	phrog_20016	NA	unknown function
UHGV-0171458_16	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0171458_16	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0171458_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171458_17	PHROG	phrog_16490	NA	unknown function
UHGV-0171458_17	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171458_18	PHROG	phrog_22984	NA	unknown function
UHGV-0171458_19	PHROG	phrog_21718	NA	unknown function
UHGV-0171458_19	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0171458_20	PHROG	phrog_3754	NA	unknown function
UHGV-0171458_20	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0171458_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171458_22	PHROG	phrog_435	endolysin	lysis
UHGV-0171458_22	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0171458_22	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171458_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171458_22	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171458_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171458_22	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0171458_23	PHROG	phrog_881	holin	lysis
UHGV-0171458_23	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0171458_23	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0171458_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0171458_23	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0171458_24	PHROG	phrog_4105	NA	unknown function
UHGV-0171458_24	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0171458_24	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0171458_25	PHROG	phrog_38044	NA	unknown function
UHGV-0171458_25	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0171458_25	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0171458_25	Structural annotation	PF19079	NA	NA
UHGV-0171458_27	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0171458_27	Structural annotation	PF07238	NA	NA
UHGV-0171458_28	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0171458_28	Structural annotation	PF13550, NF041249, COG4926	NA	NA
UHGV-0171458_29	PHROG	phrog_22212	NA	unknown function
UHGV-0171458_29	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0171458_29	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0171458_30	PHROG	phrog_1194	NA	unknown function
UHGV-0171458_30	eggNOG-mapper	60520.HR47_13415	NA	NA
UHGV-0171458_30	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0171458_31	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0171458_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171458_31	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0171458_31	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0171458_31	COG	COG1511	NA	NA
UHGV-0171458_31	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0171458_32	PHROG	phrog_806	NA	unknown function
UHGV-0171458_32	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0171458_32	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0171458_32	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0171458_32	Pfam	PF11611	NA	DUF4352
UHGV-0171458_32	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0171458_33	PHROG	phrog_706	NA	unknown function
UHGV-0171458_33	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0171458_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0171458_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0171458_33	Structural annotation	PF06854	NA	NA
UHGV-0171458_34	PHROG	phrog_11299	NA	unknown function
UHGV-0171458_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0171458_34	Structural annotation	PF10666	NA	NA
UHGV-0171458_35	PHROG	phrog_3099	NA	unknown function
UHGV-0171458_35	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0171458_35	Structural annotation	TIGR02126	NA	NA
UHGV-0171458_36	PHROG	phrog_3266	tail completion	connector
UHGV-0171458_36	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0171458_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0171458_36	Structural annotation	PF12691	NA	NA
UHGV-0171458_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0171458_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0171458_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0171458_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0171458_37	Structural annotation	PF11114	NA	NA
UHGV-0171458_38	PHROG	phrog_3366	NA	unknown function
UHGV-0171458_38	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0171458_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0171458_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0171458_39	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0171458_40	PHROG	phrog_212	major head protein	head and packaging
UHGV-0171458_40	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0171458_40	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0171458_40	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0171458_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0171458_41	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0171458_41	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0171458_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0171458_41	Structural annotation	PF06810	NA	NA
UHGV-0171458_42	Structural annotation	PF18152	NA	NA
UHGV-0171458_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171458_44	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0171458_44	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0171458_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171458_44	COG	COG2369	NA	NA
UHGV-0171458_44	Structural annotation	PF06152	NA	NA
UHGV-0171458_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171458_45	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0171458_45	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0171458_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171458_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171458_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171458_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0171458_46	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0171458_46	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0171458_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171458_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0171458_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171458_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171458_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171458_48	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0171458_48	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0171458_48	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0171458_48	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0171458_48	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0171458_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0171458_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171458_48	COG	COG0863	DNA modification methylase	NA
UHGV-0171458_48	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0171458_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0171458_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171458_49	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0171458_49	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0171458_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171458_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171458_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171458_50	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0171458_51	PHROG	phrog_18716	NA	unknown function
UHGV-0171458_51	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0171458_51	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0171458_51	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0171458_51	Structural annotation	PF18909	NA	NA
UHGV-0171458_55	Structural annotation	PF19885	NA	NA
UHGV-0171458_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0171458_58	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0171458_58	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171458_58	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171458_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0171458_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171458_60	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0171458_60	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171458_60	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0171458_60	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0171458_60	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0171458_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171458_60	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0171458_62	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171458_62	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0171458_62	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0171458_62	Pfam	PF06356	NA	DUF1064
UHGV-0171458_62	Structural annotation	PF06356	NA	NA
UHGV-0171458_64	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0171458_64	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171458_64	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0171458_64	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0171458_64	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0171458_64	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0171458_64	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0171458_64	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0171458_65	PHROG	phrog_15768	NA	unknown function
UHGV-0171458_65	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0171458_65	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0171458_65	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0171458_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171458_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171458_66	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0171458_66	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0171458_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171458_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171458_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171458_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171458_66	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171458_67	PHROG	phrog_7566	NA	unknown function
UHGV-0171458_67	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0171458_67	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0171458_68	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171458_68	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171458_68	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171458_68	Structural annotation	PF05772	NA	NA
UHGV-0171458_69	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171458_69	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0171458_69	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0171458_69	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0171458_70	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0171458_70	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0171458_70	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0171458_70	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0171458_70	Structural annotation	PF05565	NA	NA