UHGV-0171478

Genome information

Genome length 32,374 bps

CDS count 52

Completeness 56.17% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171478
vOTU ID	vOTU-028525
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590446
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.77
Jumbo phage	No

Genome content
Genome length	32,374 bps
GC content	48.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.28%
Average CDS length	559.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171478_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171478_1	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0171478_1	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171478_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171478_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171478_2	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-0171478_5	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171478_5	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0171478_5	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0171478_5	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171478_5	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0171478_6	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0171478_6	Structural annotation	TIGR01560	NA	NA
UHGV-0171478_7	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0171478_7	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0171478_8	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0171478_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0171478_10	PHROG	phrog_158	major tail protein	tail
UHGV-0171478_10	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0171478_10	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0171478_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0171478_11	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0171478_11	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0171478_11	Pfam	PF16478	NA	DUF5055
UHGV-0171478_11	Structural annotation	PF16478	NA	NA
UHGV-0171478_12	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0171478_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171478_13	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0171478_13	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0171478_13	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171478_14	PHROG	phrog_1194	NA	unknown function
UHGV-0171478_14	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0171478_14	Pfam	PF20458	NA	DUF6711
UHGV-0171478_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171478_15	PHROG	phrog_13879	NA	unknown function
UHGV-0171478_15	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0171478_15	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0171478_15	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0171478_16	PHROG	phrog_18725	NA	unknown function
UHGV-0171478_16	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0171478_18	PHROG	phrog_6465	tail protein	tail
UHGV-0171478_18	eggNOG-mapper	1203602.HMPREF1527_01080	NA	NA
UHGV-0171478_18	Structural annotation	MF_04106	NA	NA
UHGV-0171478_19	PHROG	phrog_24267	NA	unknown function
UHGV-0171478_19	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0171478_19	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0171478_19	Structural annotation	COG4675	NA	NA
UHGV-0171478_21	Structural annotation	NF040910	NA	NA
UHGV-0171478_22	KOfam	K07273	acm; lysozyme	NA
UHGV-0171478_22	PHROG	phrog_291	endolysin	lysis
UHGV-0171478_22	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0171478_22	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0171478_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171478_22	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0171478_22	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0171478_23	PHROG	phrog_1863	NA	unknown function
UHGV-0171478_23	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0171478_24	PHROG	phrog_15303	NA	unknown function
UHGV-0171478_28	PHROG	phrog_16490	NA	unknown function
UHGV-0171478_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171478_29	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0171478_30	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0171478_31	Structural annotation	NF010188	NA	NA
UHGV-0171478_32	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0171478_32	PHROG	phrog_3757	NA	unknown function
UHGV-0171478_32	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0171478_32	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0171478_32	PADLOC	IetA_00002	NA	ietAS
UHGV-0171478_32	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0171478_32	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0171478_32	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0171478_33	Structural annotation	PF07878	NA	NA
UHGV-0171478_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0171478_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0171478_35	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0171478_35	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0171478_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0171478_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0171478_35	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0171478_36	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171478_36	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0171478_36	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0171478_36	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0171478_36	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0171478_36	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0171478_36	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0171478_37	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0171478_37	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171478_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171478_41	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0171478_41	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0171478_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0171478_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171478_42	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0171478_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171478_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0171478_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171478_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0171478_43	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0171478_43	eggNOG-mapper	1423775.BAMN01000006_gene1075	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0171478_43	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0171478_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171478_43	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0171478_43	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0171478_44	Structural annotation	PF10922	NA	NA
UHGV-0171478_46	Structural annotation	TIGR03826	NA	NA
UHGV-0171478_47	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0171478_47	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0171478_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171478_49	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0171478_51	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0171478_51	Structural annotation	PF04606, NF007241	NA	NA