UHGV-0171480

Genome information

Genome length 38,854 bps

CDS count 52

Completeness 94.63% (high-quality)

geNomad score 0.9565

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171480
vOTU ID	vOTU-076139
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583540
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9565
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.21
Jumbo phage	No

Genome content
Genome length	38,854 bps
GC content	35.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	87.25%
Average CDS length	656.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171480_1	PHROG	phrog_7823	NA	unknown function
UHGV-0171480_1	eggNOG-mapper	482234.SCAZ3_03520	NA	NA
UHGV-0171480_2	UniRef90	UniRef90_UPI00031C3FE5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0171480_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0171480_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171480_3	UniRef90	UniRef90_A0A6L2ZTY0	HTH cro/C1-type domain-containing protein	NA
UHGV-0171480_3	eggNOG-mapper	272623.L105494	Lactococcus bacteriophage repressor	NA
UHGV-0171480_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171480_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171480_3	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0171480_5	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171480_5	UniRef90	UniRef90_Q9AZF4	Orf6	NA
UHGV-0171480_5	eggNOG-mapper	151539.Q9AZF4_9CAUD	NA	NA
UHGV-0171480_5	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0171480_10	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0171480_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0171480_10	UniRef90	UniRef90_UPI001CE29723	helix-turn-helix transcriptional regulator	NA
UHGV-0171480_10	eggNOG-mapper	891391.LAC30SC_06680	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0171480_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171480_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171480_10	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0171480_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0171480_12	PHROG	phrog_1499	NA	unknown function
UHGV-0171480_12	UniRef90	UniRef90_K2PIR8	AAA_23 domain-containing protein	NA
UHGV-0171480_12	eggNOG-mapper	1231377.C426_1294	AAA domain	NA
UHGV-0171480_12	PADLOC	AAA_15	NA	NA
UHGV-0171480_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171480_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171480_12	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0171480_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171480_13	UniRef90	UniRef90_UPI0019250E10	HNH endonuclease	NA
UHGV-0171480_13	eggNOG-mapper	1204533.L0LCB9_9CAUD	HNH endonuclease	NA
UHGV-0171480_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171480_14	UniRef90	UniRef90_A0A1I4HE68	AAA domain-containing protein	NA
UHGV-0171480_14	eggNOG-mapper	1231377.C426_1297	AAA domain	NA
UHGV-0171480_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0171480_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0171480_15	PHROG	phrog_2698	NA	unknown function
UHGV-0171480_15	UniRef90	UniRef90_A0A1V0NHY2	NA	NA
UHGV-0171480_15	eggNOG-mapper	1231377.C426_1298	NA	NA
UHGV-0171480_15	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0171480_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0171480_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171480_17	UniRef90	UniRef90_A0A1I4HBF2	Superfamily II DNA or RNA helicase	NA
UHGV-0171480_17	eggNOG-mapper	1231377.C426_1301	helicase	NA
UHGV-0171480_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0171480_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0171480_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171480_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0171480_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0171480_18	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0171480_18	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0171480_18	UniRef90	UniRef90_A0A1I4HBD2	mRNA interferase RelE/StbE	NA
UHGV-0171480_18	eggNOG-mapper	1235801.C822_00334	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0171480_18	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0171480_18	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0171480_18	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0171480_19	PHROG	phrog_4085	NA	unknown function
UHGV-0171480_19	UniRef90	UniRef90_A0A2S7RMV4	Translation repressor RelB	NA
UHGV-0171480_19	eggNOG-mapper	759913.SDSE_2224	NA	NA
UHGV-0171480_19	Pfam	PF19807	NA	DUF6290
UHGV-0171480_19	Structural annotation	PF19807, NF041418, COG4710	NA	NA
UHGV-0171480_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171480_20	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0171480_20	UniRef90	UniRef90_A0A1I4HBC9	Phage anti-repressor protein	NA
UHGV-0171480_20	eggNOG-mapper	888055.HMPREF9015_01059	NA	NA
UHGV-0171480_20	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0171480_20	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0171480_21	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0171480_21	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0171480_21	UniRef90	UniRef90_A0A1I4HD55	AAA domain-containing protein	NA
UHGV-0171480_21	eggNOG-mapper	1231377.C426_1302	Primase C terminal 2 (PriCT-2)	NA
UHGV-0171480_21	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0171480_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-0171480_21	COG	COG3598	RecA-family ATPase	NA
UHGV-0171480_21	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0171480_22	PHROG	phrog_3745	NA	unknown function
UHGV-0171480_22	UniRef90	UniRef90_A0A0V8E9C3	NA	NA
UHGV-0171480_22	eggNOG-mapper	1423734.JCM14202_3068	NA	NA
UHGV-0171480_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171480_23	UniRef90	UniRef90_K2NV04	Orf19	NA
UHGV-0171480_23	eggNOG-mapper	1231377.C426_1307	NA	NA
UHGV-0171480_23	Pfam	PF06356	NA	DUF1064
UHGV-0171480_23	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0171480_24	PHROG	phrog_23093	NA	unknown function
UHGV-0171480_24	UniRef90	UniRef90_UPI000A6B3D34	NA	NA
UHGV-0171480_25	PHROG	phrog_36252	NA	unknown function
UHGV-0171480_25	UniRef90	UniRef90_A0A0V8BMB9	NA	NA
UHGV-0171480_26	PHROG	phrog_35454	NA	unknown function
UHGV-0171480_27	PHROG	phrog_30014	NA	unknown function
UHGV-0171480_27	UniRef90	UniRef90_A0A0H1RVM8	Phage transcriptional regulator, ArpU family	NA
UHGV-0171480_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0171480_28	PHROG	phrog_5956	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171480_28	UniRef90	UniRef90_UPI0019214427	HNH endonuclease	NA
UHGV-0171480_28	eggNOG-mapper	1140001.I571_01740	HNH nucleases	NA
UHGV-0171480_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171480_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171480_28	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0171480_29	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0171480_29	UniRef90	UniRef90_A0A1I4HAV8	HTH cro/C1-type domain-containing protein	NA
UHGV-0171480_29	eggNOG-mapper	1231377.C426_0906	NA	NA
UHGV-0171480_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171480_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171480_30	UniRef90	UniRef90_A0A0V8EAT6	Phage terminase large subunit	NA
UHGV-0171480_30	eggNOG-mapper	1231377.C426_0905	Phage Terminase	NA
UHGV-0171480_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171480_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171480_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171480_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171480_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171480_31	UniRef90	UniRef90_A0A1I4HC92	Phage portal protein, HK97 family	NA
UHGV-0171480_31	eggNOG-mapper	1158614.I592_00620	Phage portal protein	NA
UHGV-0171480_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171480_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171480_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171480_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171480_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171480_32	UniRef90	UniRef90_A0A1I4HD63	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0171480_32	eggNOG-mapper	1231377.C426_0903	Belongs to the peptidase S14 family	NA
UHGV-0171480_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171480_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171480_32	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0171480_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171480_33	UniRef90	UniRef90_UPI001921B1AA	phage major capsid protein	NA
UHGV-0171480_33	eggNOG-mapper	1231377.C426_0902	Phage capsid family	NA
UHGV-0171480_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171480_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171480_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171480_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171480_34	PHROG	phrog_749	NA	unknown function
UHGV-0171480_34	UniRef90	UniRef90_A0A0V8ETG2	NA	NA
UHGV-0171480_34	eggNOG-mapper	1444310.JANV01000001_gene4382	NA	NA
UHGV-0171480_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171480_35	UniRef90	UniRef90_UPI001EDF1DE5	phage head-tail adapter protein	NA
UHGV-0171480_35	eggNOG-mapper	888049.HMPREF8578_0262	NA	NA
UHGV-0171480_35	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0171480_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171480_36	UniRef90	UniRef90_A0A7T4NJS9	HK97 gp10 family phage protein	NA
UHGV-0171480_36	eggNOG-mapper	1423816.BACQ01000026_gene939	NA	NA
UHGV-0171480_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171480_36	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0171480_37	PHROG	phrog_78	tail terminator	connector
UHGV-0171480_37	UniRef90	UniRef90_A0A0H1RNB1	tRNA (Guanine-N(7)-)-methyltransferase, trmB	NA
UHGV-0171480_37	eggNOG-mapper	1231377.C426_0898	NA	NA
UHGV-0171480_37	Structural annotation	PF05657	NA	NA
UHGV-0171480_38	PHROG	phrog_88	major tail protein	tail
UHGV-0171480_38	UniRef90	UniRef90_A0A1I4J0K1	Phage major tail protein, phi13 family	NA
UHGV-0171480_38	eggNOG-mapper	1231377.C426_0897	Phage tail tube protein	NA
UHGV-0171480_38	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0171480_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0171480_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0171480_39	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0171480_39	UniRef90	UniRef90_A0A0A7T228	NA	NA
UHGV-0171480_39	eggNOG-mapper	565653.EGBG_01976	NA	NA
UHGV-0171480_39	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0171480_41	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0171480_41	UniRef90	UniRef90_UPI0019211684	phage tail tape measure protein	NA
UHGV-0171480_41	eggNOG-mapper	1231377.C426_0893	Phage tail tape measure protein, TP901 family	NA
UHGV-0171480_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171480_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171480_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0171480_41	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0171480_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171480_42	UniRef90	UniRef90_K2QE77	Putative phage protein	NA
UHGV-0171480_42	eggNOG-mapper	1231377.C426_0892	phage tail	NA
UHGV-0171480_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171480_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0171480_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171480_43	UniRef90	UniRef90_V7ZLX3	Peptidase S74 domain-containing protein	NA
UHGV-0171480_43	eggNOG-mapper	1231377.C426_0891	Phage minor structural protein	NA
UHGV-0171480_43	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0171480_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171480_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0171480_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171480_43	COG	COG4926	Phage-related protein	NA
UHGV-0171480_43	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0171480_44	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0171480_44	UniRef90	UniRef90_UPI001F050AF2	BppU family phage baseplate upper protein	NA
UHGV-0171480_44	eggNOG-mapper	1231377.C426_0890	NA	NA
UHGV-0171480_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0171480_44	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0171480_47	PHROG	phrog_12298	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171480_47	UniRef90	UniRef90_A0A514ZBK5	NlpC/P60 family protein	NA
UHGV-0171480_47	eggNOG-mapper	1229517.AMFD01000023_gene1298	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171480_47	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0171480_49	UniRef90	UniRef90_UPI000D14D3CD	glycosyltransferase family 39 protein	NA
UHGV-0171480_49	eggNOG-mapper	1280671.AUJH01000003_gene1502	Dolichyl-phosphate-mannose-protein mannosyltransferase	NA
UHGV-0171480_49	Pfam	PF13231	Dolichyl-phosphate-mannose-protein mannosyltransferase	PMT_2
UHGV-0171480_50	PHROG	phrog_31683	NA	unknown function
UHGV-0171480_52	UniRef90	UniRef90_UPI001553BB6C	polymer-forming cytoskeletal protein	NA
UHGV-0171480_52	eggNOG-mapper	420890.LCGL_0619	NA	NA