UHGV-0171488

Genome information

Genome length 57,124 bps

CDS count 99

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171488
vOTU ID	vOTU-046417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574136
BioSample	SAMN07449035
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.42
Jumbo phage	No

Genome content
Genome length	57,124 bps
GC content	39.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	89.48%
Average CDS length	519.46 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171488_1	KOfam	K14059	int; integrase	NA
UHGV-0171488_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0171488_1	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0171488_1	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0171488_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171488_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171488_1	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0171488_2	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0171488_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0171488_2	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0171488_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0171488_3	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0171488_3	UniRef90	UniRef90_A0A173RED2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171488_3	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0171488_3	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0171488_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0171488_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171488_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171488_3	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0171488_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0171488_4	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0171488_4	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0171488_4	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-0171488_4	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0171488_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171488_4	COG	COG0863	DNA modification methylase	NA
UHGV-0171488_4	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0171488_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0171488_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0171488_5	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0171488_5	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0171488_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0171488_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171488_5	COG	COG0863	DNA modification methylase	NA
UHGV-0171488_5	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0171488_8	PHROG	phrog_3458	NA	unknown function
UHGV-0171488_10	PHROG	phrog_20593	NA	unknown function
UHGV-0171488_14	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0171488_15	PHROG	phrog_22292	NA	unknown function
UHGV-0171488_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0171488_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0171488_18	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0171488_18	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0171488_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0171488_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0171488_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0171488_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0171488_19	PHROG	phrog_11769	NA	unknown function
UHGV-0171488_19	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0171488_19	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0171488_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0171488_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0171488_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0171488_20	PHROG	phrog_19106	NA	unknown function
UHGV-0171488_20	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0171488_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0171488_20	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0171488_20	Structural annotation	TIGR01453	NA	NA
UHGV-0171488_23	PHROG	phrog_1029	NA	unknown function
UHGV-0171488_23	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0171488_23	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0171488_23	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0171488_24	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0171488_24	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0171488_25	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0171488_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0171488_25	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0171488_25	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0171488_25	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0171488_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0171488_25	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0171488_27	PHROG	phrog_25456	NA	unknown function
UHGV-0171488_29	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171488_29	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0171488_29	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0171488_29	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0171488_31	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0171488_34	PHROG	phrog_19610	NA	unknown function
UHGV-0171488_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0171488_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171488_35	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0171488_35	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0171488_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171488_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171488_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0171488_36	PHROG	phrog_26861	NA	unknown function
UHGV-0171488_36	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0171488_36	eggNOG-mapper	1408422.JHYF01000009_gene2023	PFAM single-strand binding protein	NA
UHGV-0171488_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171488_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171488_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0171488_41	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0171488_41	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0171488_41	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0171488_41	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0171488_41	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0171488_41	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0171488_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0171488_43	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0171488_43	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0171488_43	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0171488_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171488_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171488_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171488_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171488_44	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0171488_44	Structural annotation	NF040910	NA	NA
UHGV-0171488_45	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0171488_47	PHROG	phrog_17196	kinase	other
UHGV-0171488_47	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0171488_47	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0171488_48	PHROG	phrog_18190	NA	unknown function
UHGV-0171488_48	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0171488_48	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0171488_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0171488_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0171488_49	PHROG	phrog_1194	NA	unknown function
UHGV-0171488_49	Pfam	PF20458	NA	DUF6711
UHGV-0171488_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171488_50	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0171488_50	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0171488_50	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0171488_50	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0171488_50	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0171488_51	PHROG	phrog_806	NA	unknown function
UHGV-0171488_51	UniRef90	UniRef90_N1ZUR1	NA	NA
UHGV-0171488_51	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0171488_51	Pfam	PF11611	NA	DUF4352
UHGV-0171488_51	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0171488_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171488_52	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0171488_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0171488_52	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0171488_53	PHROG	phrog_14030	NA	unknown function
UHGV-0171488_53	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0171488_53	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0171488_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0171488_56	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0171488_56	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0171488_57	Structural annotation	PF05657	NA	NA
UHGV-0171488_58	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0171488_58	AcrCatalog	cluster_24841	NA	NA
UHGV-0171488_59	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171488_60	PHROG	phrog_443	holin	lysis
UHGV-0171488_60	UniRef90	UniRef90_UPI001D0979AE	holin	NA
UHGV-0171488_60	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0171488_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0171488_60	Structural annotation	PF16945	NA	NA
UHGV-0171488_61	PHROG	phrog_4105	NA	unknown function
UHGV-0171488_61	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0171488_62	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0171488_63	Structural annotation	PF21169	NA	NA
UHGV-0171488_64	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171488_64	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0171488_64	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0171488_64	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171488_64	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0171488_65	PHROG	phrog_909	major head protein	head and packaging
UHGV-0171488_65	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0171488_66	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0171488_67	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171488_67	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0171488_67	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171488_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171488_67	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171488_68	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171488_68	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0171488_68	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-0171488_68	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0171488_68	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0171488_69	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171488_69	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0171488_69	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0171488_69	COG	COG5410	NA	NA
UHGV-0171488_69	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0171488_74	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-0171488_75	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0171488_78	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0171488_81	Structural annotation	PF04606	NA	NA
UHGV-0171488_82	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0171488_84	PHROG	phrog_31631	NA	unknown function
UHGV-0171488_87	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0171488_87	Structural annotation	PF18267	NA	NA
UHGV-0171488_88	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0171488_92	PHROG	phrog_1233	NA	unknown function
UHGV-0171488_92	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0171488_93	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0171488_94	PHROG	phrog_20016	NA	unknown function
UHGV-0171488_94	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0171488_94	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0171488_94	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171488_95	PHROG	phrog_16490	NA	unknown function
UHGV-0171488_95	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0171488_96	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171488_96	UniRef90	UniRef90_UPI00189871DD	NUMOD4 domain-containing protein	NA
UHGV-0171488_96	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0171488_96	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0171488_96	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0171488_96	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0171488_96	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0171488_96	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0171488_97	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0171488_98	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA