UHGV-0171492

Genome information

Genome length 35,589 bps

CDS count 53

Completeness 84.55% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171492
vOTU ID	vOTU-022432
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590444
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.96
Jumbo phage	No

Genome content
Genome length	35,589 bps
GC content	51.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.28%
Average CDS length	623.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171492_1	PHROG	phrog_9876	holin	lysis
UHGV-0171492_1	UniRef90	UniRef90_A0A2J5J0U6	Holin	NA
UHGV-0171492_1	eggNOG-mapper	1005994.GTGU_01414	lysis protein S	NA
UHGV-0171492_1	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0171492_1	Structural annotation	PF04971	NA	NA
UHGV-0171492_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0171492_2	PHROG	phrog_7	endolysin	lysis
UHGV-0171492_2	UniRef90	UniRef90_A0A2J4YKJ2	Lysozyme	NA
UHGV-0171492_2	eggNOG-mapper	399742.Ent638_2248	Phage lysozyme	NA
UHGV-0171492_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0171492_2	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0171492_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0171492_2	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0171492_3	PHROG	phrog_2536	Rz-like spanin	lysis
UHGV-0171492_3	eggNOG-mapper	637910.ROD_10412	NA	NA
UHGV-0171492_4	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0171492_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0171492_4	UniRef90	UniRef90_UPI001CC127D2	tyrosine-type recombinase/integrase	NA
UHGV-0171492_4	eggNOG-mapper	1127516.H9C152_9CAUD	DNA integration	NA
UHGV-0171492_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171492_4	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA
UHGV-0171492_5	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0171492_5	UniRef90	UniRef90_A0A2I8XSE6	NA	NA
UHGV-0171492_5	eggNOG-mapper	1443113.LC20_02243	NA	NA
UHGV-0171492_5	Pfam	PF13986	NA	DUF4224
UHGV-0171492_5	Structural annotation	PF13986	NA	NA
UHGV-0171492_6	PHROG	phrog_27062	NA	unknown function
UHGV-0171492_6	eggNOG-mapper	349966.DJ58_4408	NA	NA
UHGV-0171492_7	PHROG	phrog_2482	NA	unknown function
UHGV-0171492_7	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0171492_8	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0171492_8	UniRef90	UniRef90_UPI0012B81C32	siphovirus Gp157 family protein	NA
UHGV-0171492_8	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0171492_8	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0171492_8	Structural annotation	PF05565	NA	NA
UHGV-0171492_9	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0171492_9	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171492_9	UniRef90	UniRef90_A0A378CJE1	Putative exodeoxyribonuclease VIII	NA
UHGV-0171492_9	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0171492_9	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0171492_9	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0171492_10	PHROG	phrog_2479	NA	unknown function
UHGV-0171492_10	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0171492_12	eggNOG-mapper	343509.SG1177	NA	NA
UHGV-0171492_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171492_13	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0171492_13	UniRef90	UniRef90_A0A2J5TPH6	Helix-turn-helix domain-containing protein	NA
UHGV-0171492_13	eggNOG-mapper	82996.sch_09120	Helix-turn-helix domain	NA
UHGV-0171492_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171492_13	NCBIFam	NF007257.0	transcriptional repressor DicA	NA
UHGV-0171492_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171492_13	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0171492_14	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0171492_14	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0171492_14	UniRef90	UniRef90_A0A5D3JAW2	Transcriptional regulator	NA
UHGV-0171492_14	eggNOG-mapper	82996.sch_09125	sequence-specific DNA binding	NA
UHGV-0171492_14	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0171492_14	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0171492_14	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0171492_15	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0171492_15	UniRef90	UniRef90_A0A2J5J2K4	YdaT_toxin domain-containing protein	NA
UHGV-0171492_15	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0171492_15	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0171492_15	Structural annotation	PF06254	NA	NA
UHGV-0171492_16	PHROG	phrog_2465	NA	unknown function
UHGV-0171492_16	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0171492_16	eggNOG-mapper	598467.BrE312_2720	NA	NA
UHGV-0171492_17	PHROG	phrog_1347	NA	unknown function
UHGV-0171492_17	UniRef90	UniRef90_A0A2J4ZHR7	Helix-turn-helix domain-containing protein	NA
UHGV-0171492_17	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0171492_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0171492_17	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0171492_17	Structural annotation	PF13730, MF_01909, NF040939, COG5529	NA	NA
UHGV-0171492_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0171492_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0171492_18	UniRef90	UniRef90_A0A7Z7SA69	DNA helicase	NA
UHGV-0171492_18	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0171492_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0171492_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0171492_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0171492_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0171492_19	PHROG	phrog_4183	NA	unknown function
UHGV-0171492_19	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0171492_19	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0171492_20	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0171492_20	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0171492_20	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0171492_22	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0171492_22	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0171492_22	UniRef90	UniRef90_A0A1Q8YNF8	Adenine methylase	NA
UHGV-0171492_22	eggNOG-mapper	1115515.EV102420_06_00040	Belongs to the MT-A70-like family	NA
UHGV-0171492_22	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0171492_22	Pfam	PF05063	MT-A70	MT-A70
UHGV-0171492_22	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0171492_22	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0171492_23	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0171492_23	UniRef90	UniRef90_A0A140NS95	NA	NA
UHGV-0171492_23	eggNOG-mapper	293826.Amet_2600	NA	NA
UHGV-0171492_24	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171492_24	UniRef90	UniRef90_R4YHL4	HNHc domain-containing protein	NA
UHGV-0171492_24	eggNOG-mapper	1278971.AOGF01000059_gene160	HNH endonuclease	NA
UHGV-0171492_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0171492_24	Structural annotation	PF13392, COG3415	NA	NA
UHGV-0171492_26	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0171492_26	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0171492_27	PHROG	phrog_340	NA	unknown function
UHGV-0171492_27	eggNOG-mapper	1115515.EV102420_14_01080	NA	NA
UHGV-0171492_28	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171492_28	UniRef90	UniRef90_A0A1Q8YNN0	NA	NA
UHGV-0171492_28	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0171492_28	Pfam	PF07105	NA	DUF1367
UHGV-0171492_28	Structural annotation	PF07105	NA	NA
UHGV-0171492_29	PHROG	phrog_1588	NA	unknown function
UHGV-0171492_29	UniRef90	UniRef90_UPI00111B6328	Ref family recombination enhancement nuclease	NA
UHGV-0171492_29	eggNOG-mapper	471874.PROSTU_02124	NA	NA
UHGV-0171492_29	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0171492_29	Structural annotation	PF16786	NA	NA
UHGV-0171492_31	PHROG	phrog_16553	transcriptional repressor	transcription regulation
UHGV-0171492_31	UniRef90	UniRef90_A0A5S4UJ76	Helix-turn-helix transcriptional regulator	NA
UHGV-0171492_31	eggNOG-mapper	2342.SOPEG_1041	NA	NA
UHGV-0171492_32	PHROG	phrog_17476	NA	unknown function
UHGV-0171492_32	eggNOG-mapper	343509.SG1185	NA	NA
UHGV-0171492_33	PHROG	phrog_9015	NA	unknown function
UHGV-0171492_33	eggNOG-mapper	1005994.GTGU_01430	NA	NA
UHGV-0171492_34	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0171492_34	UniRef90	UniRef90_A0A1Q8YNF0	Phage tail protein	NA
UHGV-0171492_34	eggNOG-mapper	1005994.GTGU_01429	Bacteriophage head to tail connecting protein	NA
UHGV-0171492_34	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0171492_34	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0171492_35	PHROG	phrog_5977	NA	unknown function
UHGV-0171492_35	eggNOG-mapper	1005994.GTGU_01428	NA	NA
UHGV-0171492_36	PHROG	phrog_3742	NA	unknown function
UHGV-0171492_36	UniRef90	UniRef90_A0A5J6B4M5	Endoprotease	NA
UHGV-0171492_36	eggNOG-mapper	1005994.GTGU_01427	NA	NA
UHGV-0171492_38	PHROG	phrog_872	NA	unknown function
UHGV-0171492_38	UniRef90	UniRef90_A0A6P1URP9	NA	NA
UHGV-0171492_38	eggNOG-mapper	358220.C380_09735	NA	NA
UHGV-0171492_38	Pfam	PF11195	NA	DUF2829
UHGV-0171492_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0171492_38	Structural annotation	PF11195	NA	NA
UHGV-0171492_39	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0171492_39	UniRef90	UniRef90_UPI001C126928	phage capsid protein	NA
UHGV-0171492_39	eggNOG-mapper	598467.BrE312_2703	NA	NA
UHGV-0171492_39	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0171492_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171492_40	PHROG	phrog_394	tail protein	tail
UHGV-0171492_40	eggNOG-mapper	598467.BrE312_2702	NA	NA
UHGV-0171492_40	Structural annotation	PF17212	NA	NA
UHGV-0171492_41	PHROG	phrog_376	tail protein	tail
UHGV-0171492_41	eggNOG-mapper	1005994.GTGU_01424	NA	NA
UHGV-0171492_41	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0171492_42	PHROG	phrog_1249	acetyltransferase	other
UHGV-0171492_42	UniRef90	UniRef90_UPI001EF5FCE0	GNAT family N-acetyltransferase	NA
UHGV-0171492_42	eggNOG-mapper	343509.SG1191	Acetyltransferase (GNAT) family	NA
UHGV-0171492_42	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0171492_42	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0171492_42	Structural annotation	PF13527, MF_02210, NF000021, COG0456	NA	NA
UHGV-0171492_43	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0171492_43	eggNOG-mapper	1005994.GTGU_01422	NA	NA
UHGV-0171492_43	Structural annotation	PF09486	NA	NA
UHGV-0171492_44	UniRef90	UniRef90_A0A6B9G6I2	SLT domain-containing protein	NA
UHGV-0171492_44	eggNOG-mapper	1344012.ATMI01000056_gene1746	NA	NA
UHGV-0171492_45	PHROG	phrog_14422	NA	unknown function
UHGV-0171492_45	eggNOG-mapper	1234364.AMSF01000010_gene569	NA	NA
UHGV-0171492_46	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0171492_46	UniRef90	UniRef90_A0A345MKM3	Structural protein	NA
UHGV-0171492_46	eggNOG-mapper	1344012.ATMI01000056_gene1748	NA	NA
UHGV-0171492_47	PHROG	phrog_1287	NA	unknown function
UHGV-0171492_47	UniRef90	UniRef90_UPI0003F78C33	Arc family DNA-binding protein	NA
UHGV-0171492_47	eggNOG-mapper	1217713.F993_01473	Arc-like DNA binding domain	NA
UHGV-0171492_47	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0171492_48	PHROG	phrog_2685	partition protein ATPase	other
UHGV-0171492_48	UniRef90	UniRef90_UPI0009832BC6	Arc family DNA-binding protein	NA
UHGV-0171492_48	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0171492_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171492_50	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0171492_50	UniRef90	UniRef90_R4YBJ1	KilA-N domain-containing protein	NA
UHGV-0171492_50	eggNOG-mapper	10678.KILA_BPP1	DNA binding	NA
UHGV-0171492_50	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0171492_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171492_50	Structural annotation	PF03374, PF08346, TIGR02681, TIGR04176, COG3561, COG3645	NA	NA
UHGV-0171492_51	PHROG	phrog_9277	NA	unknown function
UHGV-0171492_51	eggNOG-mapper	598467.BrE312_2692	NA	NA
UHGV-0171492_52	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171492_52	UniRef90	UniRef90_A0A6P1UTP0	Phage terminase large subunit	NA
UHGV-0171492_52	eggNOG-mapper	78398.KS43_20320	chromosome segregation	NA
UHGV-0171492_52	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0171492_52	COG	COG5410	NA	NA
UHGV-0171492_52	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0171492_53	PHROG	phrog_1640	tail protein	tail
UHGV-0171492_53	UniRef90	UniRef90_UPI0013D7850E	phage tail fiber protein	NA
UHGV-0171492_53	eggNOG-mapper	1005994.GTGU_01416	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-0171492_53	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0171492_53	COG	COG5434	Polygalacturonase	NA