UHGV-0171532

Genome information

Genome length 25,493 bps

CDS count 29

Completeness 56.84% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171532
vOTU ID	vOTU-028527
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589746
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.47
Jumbo phage	No

Genome content
Genome length	25,493 bps
GC content	55.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	91.32%
Average CDS length	804.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171532_2	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0171532_2	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0171532_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171532_4	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0171532_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171532_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0171532_6	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0171532_6	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0171532_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171532_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171532_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171532_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0171532_7	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0171532_8	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171532_8	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0171532_8	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0171532_8	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0171532_8	COG	COG5410	NA	NA
UHGV-0171532_8	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0171532_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171532_9	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0171532_9	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171532_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171532_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171532_11	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0171532_11	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0171532_11	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0171532_11	Pfam	PF17236	NA	DUF5309
UHGV-0171532_11	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0171532_12	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0171532_12	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0171532_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0171532_12	Structural annotation	TIGR01560	NA	NA
UHGV-0171532_13	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0171532_14	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0171532_15	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0171532_16	PHROG	phrog_158	major tail protein	tail
UHGV-0171532_16	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0171532_16	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0171532_16	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0171532_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0171532_17	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0171532_17	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0171532_17	Pfam	PF16478	NA	DUF5055
UHGV-0171532_17	Structural annotation	PF16478	NA	NA
UHGV-0171532_18	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0171532_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171532_19	UniRef90	UniRef90_A0A1I1XW41	Phage-related protein	NA
UHGV-0171532_19	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0171532_19	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171532_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0171532_20	PHROG	phrog_1194	NA	unknown function
UHGV-0171532_20	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0171532_20	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0171532_20	Pfam	PF20458	NA	DUF6711
UHGV-0171532_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171532_21	PHROG	phrog_6616	tail protein	tail
UHGV-0171532_21	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0171532_21	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0171532_21	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0171532_22	PHROG	phrog_372	tail protein	tail
UHGV-0171532_22	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0171532_22	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0171532_22	Pfam	PF05895	NA	DUF859
UHGV-0171532_22	COG	COG4675	Phage tail collar domain	NA
UHGV-0171532_22	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0171532_23	Structural annotation	PF10651	NA	NA
UHGV-0171532_24	PHROG	phrog_30034	NA	unknown function
UHGV-0171532_24	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0171532_24	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0171532_25	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0171532_25	PHROG	phrog_2234	tail spike protein	tail
UHGV-0171532_25	UniRef90	UniRef90_UPI00191E7A5D	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0171532_25	eggNOG-mapper	710243.XP_007596484.1	Glucan 1,3-beta-glucosidase	NA
UHGV-0171532_25	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0171532_26	PHROG	phrog_199	holin	lysis
UHGV-0171532_26	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0171532_26	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0171532_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171532_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171532_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171532_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171532_27	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171532_27	PHROG	phrog_435	endolysin	lysis
UHGV-0171532_27	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171532_27	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0171532_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171532_27	Pfam	PF05036	SPOR domain	SPOR
UHGV-0171532_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171532_27	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0171532_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171532_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171532_28	UniRef90	UniRef90_A0A316PBK9	HTH cro/C1-type domain-containing protein	NA
UHGV-0171532_28	eggNOG-mapper	1297617.JPJD01000051_gene1860	DNA-binding helix-turn-helix protein	NA
UHGV-0171532_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171532_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA