UHGV-0171545

Genome information

Genome length 38,442 bps

CDS count 61

Completeness 94.95% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171545
vOTU ID	vOTU-010855
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590441
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.05
Jumbo phage	No

Genome content
Genome length	38,442 bps
GC content	54.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.06%
Average CDS length	579.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171545_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0171545_1	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0171545_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171545_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171545_2	UniRef90	UniRef90_A0A1T4YES7	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171545_2	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0171545_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171545_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171545_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171545_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171545_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171545_3	UniRef90	UniRef90_A0A413HUL0	Phage portal protein	NA
UHGV-0171545_3	eggNOG-mapper	864178.E2ELI3_9CAUD	Phage portal protein	NA
UHGV-0171545_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171545_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171545_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171545_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171545_4	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0171545_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0171545_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171545_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171545_4	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0171545_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171545_5	UniRef90	UniRef90_UPI001EE92F83	phage major capsid protein	NA
UHGV-0171545_5	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0171545_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171545_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171545_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171545_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171545_6	PHROG	phrog_749	NA	unknown function
UHGV-0171545_6	UniRef90	UniRef90_A0A4Z0H451	Phage gp6-like head-tail connector protein	NA
UHGV-0171545_6	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0171545_7	PHROG	phrog_19734	NA	unknown function
UHGV-0171545_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0171545_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171545_8	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0171545_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171545_9	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0171545_9	eggNOG-mapper	498761.HM1_2964	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171545_9	Structural annotation	TIGR01725	NA	NA
UHGV-0171545_10	PHROG	phrog_88	major tail protein	tail
UHGV-0171545_10	COG	COG5492	NA	NA
UHGV-0171545_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0171545_12	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0171545_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0171545_12	UniRef90	UniRef90_A0A6N9P4L8	Phage tail tape measure protein	NA
UHGV-0171545_12	eggNOG-mapper	445972.ANACOL_00191	Phage-related minor tail protein	NA
UHGV-0171545_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171545_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171545_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0171545_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0171545_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171545_13	eggNOG-mapper	1118055.CAGU01000013_gene767	NA	NA
UHGV-0171545_13	Structural annotation	PF05709, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0171545_14	PHROG	phrog_3558	tail protein	tail
UHGV-0171545_14	UniRef90	UniRef90_UPI001373F113	phage tail protein	NA
UHGV-0171545_14	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0171545_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171545_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171545_14	COG	COG4926	Phage-related protein	NA
UHGV-0171545_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171545_15	PHROG	phrog_199	holin	lysis
UHGV-0171545_15	UniRef90	UniRef90_A0A6G3M4V0	Holin	NA
UHGV-0171545_15	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-0171545_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171545_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171545_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171545_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171545_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171545_16	PHROG	phrog_1794	amidase	lysis
UHGV-0171545_16	UniRef90	UniRef90_A0A1Y4NYC1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0171545_16	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171545_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171545_16	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0171545_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171545_16	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0171545_17	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0171545_17	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0171545_19	PHROG	phrog_22984	NA	unknown function
UHGV-0171545_20	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0171545_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171545_22	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0171545_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171545_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0171545_23	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-0171545_23	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0171545_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171545_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171545_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171545_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171545_23	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA
UHGV-0171545_24	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0171545_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171545_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0171545_28	UniRef90	UniRef90_UPI00189E0F3C	helix-turn-helix domain-containing protein	NA
UHGV-0171545_28	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171545_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171545_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171545_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171545_40	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0171545_42	PHROG	phrog_38338	NA	unknown function
UHGV-0171545_42	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0171545_43	PHROG	phrog_8470	NA	unknown function
UHGV-0171545_43	UniRef90	UniRef90_UPI001C00AC20	PcfJ domain-containing protein	NA
UHGV-0171545_43	eggNOG-mapper	693746.OBV_25400	PcfJ-like protein	NA
UHGV-0171545_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171545_43	Structural annotation	PF14284	NA	NA
UHGV-0171545_44	PHROG	phrog_15609	NA	unknown function
UHGV-0171545_44	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0171545_44	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0171545_44	Pfam	PF11300	NA	DUF3102
UHGV-0171545_44	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0171545_44	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0171545_46	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0171545_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0171545_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171545_48	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0171545_48	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0171545_48	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0171545_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0171545_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171545_48	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0171545_49	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0171545_49	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0171545_49	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171545_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171545_49	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0171545_54	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171545_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0171545_54	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0171545_54	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0171545_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0171545_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171545_55	UniRef90	UniRef90_UPI00085C123B	helix-turn-helix domain-containing protein	NA
UHGV-0171545_55	eggNOG-mapper	1304880.JAGB01000001_gene917	PFAM Helix-turn-helix	NA
UHGV-0171545_55	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171545_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171545_55	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0171545_57	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171545_57	UniRef90	UniRef90_UPI00189E01BC	NA	NA
UHGV-0171545_57	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0171545_57	Pfam	PF06356	NA	DUF1064
UHGV-0171545_57	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0171545_59	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171545_59	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0171545_59	Structural annotation	PF21578, NF033538	NA	NA