UHGV-0171554

Genome information

Genome length 40,349 bps

CDS count 58

Completeness 93.58% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171554
vOTU ID	vOTU-065082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593053
BioSample	SAMN09781706
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.61
Jumbo phage	No

Genome content
Genome length	40,349 bps
GC content	44.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.31%
Average CDS length	652.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171554_1	PHROG	phrog_22529	NA	unknown function
UHGV-0171554_1	UniRef90	UniRef90_A0A8D9UGZ3	3D containing protein	NA
UHGV-0171554_1	eggNOG-mapper	742735.HMPREF9467_00921	3D domain	NA
UHGV-0171554_1	Pfam	PF06725	3D domain	3D
UHGV-0171554_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0171554_3	PHROG	phrog_6038	NA	unknown function
UHGV-0171554_4	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0171554_7	UniRef90	UniRef90_A0A8D9PDV0	Zinc-finger double domain protein	NA
UHGV-0171554_9	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171554_9	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0171554_9	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0171554_10	PHROG	phrog_3489	NA	unknown function
UHGV-0171554_10	UniRef90	UniRef90_A0A8D9PE01	DNA-binding domain protein	NA
UHGV-0171554_10	Structural annotation	PF19157, NF002506	NA	NA
UHGV-0171554_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171554_11	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0171554_11	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0171554_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0171554_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0171554_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0171554_12	PHROG	phrog_3724	NA	unknown function
UHGV-0171554_12	UniRef90	UniRef90_A0A3M8AMJ4	NA	NA
UHGV-0171554_12	eggNOG-mapper	1178540.BA70_16405	NA	NA
UHGV-0171554_12	Pfam	PF05037	NA	DUF669
UHGV-0171554_12	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0171554_13	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0171554_13	PHROG	phrog_18685	NA	unknown function
UHGV-0171554_13	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0171554_13	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0171554_13	PADLOC	drt-cluster192	DRT	DRT
UHGV-0171554_13	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0171554_13	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0171554_13	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0171554_13	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0171554_13	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0171554_14	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-0171554_14	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0171554_15	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0171554_15	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0171554_15	UniRef90	UniRef90_A0A8D9UHD0	Queuosine biosynthesis protein	NA
UHGV-0171554_15	eggNOG-mapper	699218.HMPREF0889_1467	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0171554_15	PADLOC	QueC_00001	QueC	CBASS
UHGV-0171554_15	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0171554_15	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0171554_15	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0171554_15	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-0171554_15	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0171554_16	UniRef90	UniRef90_A0A8D9UHC6	QueF-like protein	NA
UHGV-0171554_16	Structural annotation	PF01227, MF_00818, TIGR03139, COG0780	NA	NA
UHGV-0171554_17	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0171554_17	PHROG	phrog_4899	NA	unknown function
UHGV-0171554_17	UniRef90	UniRef90_A0A8D9PDW2	Putative vitamin uptake transporter	NA
UHGV-0171554_17	eggNOG-mapper	1236494.BAJN01000018_gene2066	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0171554_17	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0171554_17	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0171554_17	COG	COG1738	NA	NA
UHGV-0171554_17	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0171554_17	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0171554_18	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0171554_18	UniRef90	UniRef90_A0A8D9PDV7	NTP-PPase	NA
UHGV-0171554_18	eggNOG-mapper	1122223.KB890688_gene1837	PFAM MazG nucleotide pyrophosphohydrolase	NA
UHGV-0171554_18	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0171554_18	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0171554_18	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0171554_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-0171554_19	UniRef90	UniRef90_A0A8D9PDY1	Nucelotide kinase	NA
UHGV-0171554_19	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0171554_19	Pfam	PF11753	NA	DUF3310
UHGV-0171554_20	UniRef90	UniRef90_A0A8D9UH23	Queuine tRNA-ribosyltransferase	NA
UHGV-0171554_20	eggNOG-mapper	996637.SGM_5178	NA	NA
UHGV-0171554_20	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0171554_21	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0171554_21	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171554_21	UniRef90	UniRef90_A0A8D9PDS0	DNA polymerase	NA
UHGV-0171554_21	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0171554_21	PADLOC	drt-cluster58	DRT	DRT
UHGV-0171554_21	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0171554_21	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0171554_21	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0171554_21	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0171554_22	UniRef90	UniRef90_A0A1Q6V1V0	NA	NA
UHGV-0171554_22	Structural annotation	PF20037	NA	NA
UHGV-0171554_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0171554_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171554_23	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-0171554_23	eggNOG-mapper	5693.XP_803224.1	Transcription activator	NA
UHGV-0171554_23	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0171554_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0171554_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171554_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0171554_23	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0171554_24	PHROG	phrog_1233	NA	unknown function
UHGV-0171554_24	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0171554_24	Structural annotation	PF13058	NA	NA
UHGV-0171554_25	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-0171554_25	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0171554_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171554_28	PHROG	phrog_16490	NA	unknown function
UHGV-0171554_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171554_29	PHROG	phrog_22984	NA	unknown function
UHGV-0171554_30	PHROG	phrog_21718	NA	unknown function
UHGV-0171554_30	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0171554_32	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0171554_33	UniRef90	UniRef90_A0A8D9PDZ2	Insulin receptor	NA
UHGV-0171554_35	PHROG	phrog_435	endolysin	lysis
UHGV-0171554_35	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0171554_35	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171554_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171554_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171554_35	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0171554_36	PHROG	phrog_881	holin	lysis
UHGV-0171554_36	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0171554_36	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0171554_36	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0171554_36	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0171554_37	PHROG	phrog_1863	NA	unknown function
UHGV-0171554_37	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0171554_37	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0171554_39	UniRef90	UniRef90_A0A8D9UHD8	mRNA splicing protein	NA
UHGV-0171554_39	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0171554_39	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0171554_39	Structural annotation	PF14583, MF_01195, TIGR03547, COG3055	NA	NA
UHGV-0171554_40	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0171554_40	eggNOG-mapper	641107.CDLVIII_1355	NA	NA
UHGV-0171554_42	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0171554_42	Structural annotation	PF07238	NA	NA
UHGV-0171554_43	PHROG	phrog_6616	tail protein	tail
UHGV-0171554_43	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0171554_43	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0171554_43	Structural annotation	PF07902, NF033848, COG3500	NA	NA
UHGV-0171554_44	PHROG	phrog_1194	NA	unknown function
UHGV-0171554_44	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0171554_44	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0171554_44	Pfam	PF20458	NA	DUF6711
UHGV-0171554_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171554_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171554_45	UniRef90	UniRef90_A0A8D9PDW4	Minor tail protein	NA
UHGV-0171554_45	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0171554_45	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171554_45	Structural annotation	PF08919	NA	NA
UHGV-0171554_46	Structural annotation	PF11836	NA	NA
UHGV-0171554_47	PHROG	phrog_1407	major tail protein	tail
UHGV-0171554_47	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0171554_47	eggNOG-mapper	997346.HMPREF9374_2640	Phage tail tube protein	NA
UHGV-0171554_47	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0171554_47	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0171554_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0171554_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0171554_48	Structural annotation	PF12691	NA	NA
UHGV-0171554_49	UniRef90	UniRef90_A0A8D9PDS5	Minor capsid protein	NA
UHGV-0171554_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171554_49	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0171554_50	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0171554_51	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0171554_51	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0171554_51	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0171554_51	Structural annotation	PF20557	NA	NA
UHGV-0171554_53	PHROG	phrog_247	major head protein	head and packaging
UHGV-0171554_53	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0171554_53	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0171554_53	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0171554_54	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0171554_54	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0171554_54	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0171554_54	Structural annotation	PF06810	NA	NA
UHGV-0171554_55	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171554_55	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0171554_55	eggNOG-mapper	86416.Clopa_2538	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171554_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171554_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171554_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171554_56	PHROG	phrog_10250	NA	unknown function
UHGV-0171554_56	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0171554_56	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0171554_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171554_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171554_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171554_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA