UHGV-0171558

Genome information

Genome length 25,945 bps

CDS count 40

Completeness 61.42% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171558
vOTU ID	vOTU-028528
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581615
BioSample	SAMN09781694
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.96
Jumbo phage	No

Genome content
Genome length	25,945 bps
GC content	51.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	88.82%
Average CDS length	577.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171558_1	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0171558_3	PHROG	phrog_17977	NA	unknown function
UHGV-0171558_3	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0171558_3	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171558_4	Structural annotation	PF13554	NA	NA
UHGV-0171558_5	PHROG	phrog_885	major tail protein	tail
UHGV-0171558_5	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0171558_5	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0171558_5	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0171558_8	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0171558_8	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0171558_8	eggNOG-mapper	883066.HMPREF9233_00516	tape measure	NA
UHGV-0171558_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0171558_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0171558_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0171558_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0171558_9	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0171558_9	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0171558_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171558_9	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0171558_10	PHROG	phrog_3558	tail protein	tail
UHGV-0171558_10	UniRef90	UniRef90_A0A3E2U3C8	Prophage_tail domain-containing protein	NA
UHGV-0171558_10	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0171558_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171558_10	COG	COG4926	Phage-related protein	NA
UHGV-0171558_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0171558_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0171558_12	PHROG	phrog_291	endolysin	lysis
UHGV-0171558_12	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0171558_12	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0171558_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171558_12	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0171558_12	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0171558_14	PHROG	phrog_15303	NA	unknown function
UHGV-0171558_16	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171558_16	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0171558_16	UniRef90	UniRef90_A0A7U6KDQ3	Phage antirepressor protein	NA
UHGV-0171558_16	eggNOG-mapper	662755.CRES_0897	Prophage antirepressor	NA
UHGV-0171558_16	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0171558_16	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171558_16	COG	COG3617	Prophage antirepressor	NA
UHGV-0171558_16	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0171558_17	Structural annotation	PF07342	NA	NA
UHGV-0171558_18	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0171558_18	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0171558_18	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0171558_18	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0171558_19	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0171558_19	Structural annotation	PF19839, NF040976	NA	NA
UHGV-0171558_20	PHROG	phrog_3754	NA	unknown function
UHGV-0171558_20	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0171558_21	PHROG	phrog_21718	NA	unknown function
UHGV-0171558_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0171558_22	PHROG	phrog_22984	NA	unknown function
UHGV-0171558_23	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171558_23	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0171558_24	PHROG	phrog_16490	NA	unknown function
UHGV-0171558_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171558_25	PHROG	phrog_20016	NA	unknown function
UHGV-0171558_25	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0171558_25	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0171558_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171558_26	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0171558_26	Structural annotation	PF12510	NA	NA
UHGV-0171558_28	KOfam	K14059	int; integrase	NA
UHGV-0171558_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0171558_28	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0171558_28	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0171558_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171558_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171558_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171558_28	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0171558_29	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0171558_29	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0171558_29	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0171558_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171558_29	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0171558_32	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0171558_32	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0171558_34	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0171558_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171558_35	UniRef90	UniRef90_A0A8D9UHB1	Repressor protein CI	NA
UHGV-0171558_35	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0171558_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171558_35	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0171558_36	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0171558_36	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0171558_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171558_39	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0171558_39	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0171558_39	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0171558_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0171558_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171558_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0171558_39	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0171558_39	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0171558_40	PHROG	phrog_4433	NA	unknown function
UHGV-0171558_40	eggNOG-mapper	187303.BN69_1605	regulation of DNA-templated transcription, elongation	NA
UHGV-0171558_40	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171558_40	Structural annotation	NF000318	NA	NA