UHGV-0171561

Genome information

Genome length 29,053 bps

CDS count 55

Completeness 71.12% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171561
vOTU ID	vOTU-028529
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581613
BioSample	SAMN09781694
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.45
Jumbo phage	No

Genome content
Genome length	29,053 bps
GC content	52.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	97.72%
Average CDS length	522.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171561_3	PHROG	phrog_4973	NA	unknown function
UHGV-0171561_3	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0171561_3	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0171561_3	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0171561_3	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0171561_5	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171561_5	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-0171561_5	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0171561_5	Pfam	PF06378	NA	DUF1071
UHGV-0171561_5	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0171561_6	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0171561_6	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0171561_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171561_7	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171561_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171561_7	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0171561_8	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171561_8	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0171561_8	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0171561_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171561_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171561_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171561_10	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0171561_10	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0171561_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171561_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171561_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171561_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171561_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171561_11	PHROG	phrog_15768	NA	unknown function
UHGV-0171561_11	UniRef90	UniRef90_A0A7C1PUJ6	NA	NA
UHGV-0171561_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171561_11	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0171561_15	PHROG	phrog_4019	NA	unknown function
UHGV-0171561_16	PHROG	phrog_3136	NA	unknown function
UHGV-0171561_16	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0171561_16	eggNOG-mapper	1423144.Gal_01618	sequence-specific DNA binding	NA
UHGV-0171561_16	Pfam	PF04266	ASCH domain	ASCH
UHGV-0171561_16	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0171561_16	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0171561_17	PHROG	phrog_38832	NA	unknown function
UHGV-0171561_17	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0171561_17	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0171561_18	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171561_18	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0171561_18	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0171561_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0171561_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0171561_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0171561_23	PHROG	phrog_22543	NA	unknown function
UHGV-0171561_23	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0171561_26	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0171561_26	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0171561_26	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0171561_27	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171561_27	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0171561_27	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0171561_28	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-0171561_29	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0171561_30	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0171561_30	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-0171561_30	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0171561_30	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0171561_30	Structural annotation	PF18909	NA	NA
UHGV-0171561_31	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0171561_31	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0171561_32	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0171561_32	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0171561_32	Structural annotation	PF13542	NA	NA
UHGV-0171561_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171561_33	PHROG	phrog_10250	NA	unknown function
UHGV-0171561_33	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0171561_33	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0171561_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171561_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0171561_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171561_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171561_33	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171561_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171561_34	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0171561_34	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171561_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171561_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0171561_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0171561_35	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0171561_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0171561_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0171561_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0171561_35	COG	COG2369	NA	NA
UHGV-0171561_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0171561_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171561_36	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0171561_36	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171561_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171561_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0171561_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0171561_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0171561_37	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0171561_37	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0171561_37	Structural annotation	PF06810	NA	NA
UHGV-0171561_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0171561_38	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0171561_38	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0171561_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0171561_38	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171561_40	PHROG	phrog_17977	NA	unknown function
UHGV-0171561_40	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0171561_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171561_41	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0171561_41	Structural annotation	PF11367	NA	NA
UHGV-0171561_42	PHROG	phrog_885	major tail protein	tail
UHGV-0171561_42	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0171561_42	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0171561_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0171561_43	PHROG	phrog_18646	NA	unknown function
UHGV-0171561_45	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0171561_45	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0171561_45	COG	COG5412	Phage-related protein	NA
UHGV-0171561_45	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0171561_47	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0171561_47	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0171561_47	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0171561_47	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0171561_48	PHROG	phrog_26795	NA	unknown function
UHGV-0171561_48	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0171561_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0171561_49	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0171561_50	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0171561_51	PHROG	phrog_31538	NA	unknown function
UHGV-0171561_51	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0171561_52	PHROG	phrog_13589	NA	unknown function
UHGV-0171561_52	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0171561_53	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-0171561_53	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0171561_53	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0171561_53	COG	COG5492	NA	NA
UHGV-0171561_53	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0171561_55	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0171561_55	Structural annotation	PF14600	NA	NA