UHGV-0171562

Genome information

Genome length 31,471 bps

CDS count 57

Completeness 95.26% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171562
vOTU ID	vOTU-070097
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581612
BioSample	SAMN09781694
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.51
Jumbo phage	No

Genome content
Genome length	31,471 bps
GC content	54.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.53%
Average CDS length	527.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171562_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171562_1	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0171562_1	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0171562_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171562_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171562_3	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0171562_3	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0171562_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171562_5	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0171562_5	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0171562_12	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-0171562_12	Pfam	PF04448	NA	DUF551
UHGV-0171562_14	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0171562_14	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0171562_14	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0171562_14	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0171562_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0171562_15	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0171562_15	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0171562_15	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0171562_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0171562_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0171562_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171562_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171562_15	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0171562_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0171562_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171562_28	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0171562_28	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171562_28	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171562_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171562_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171562_30	PHROG	phrog_26910	NA	unknown function
UHGV-0171562_30	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-0171562_30	Structural annotation	PF13028	NA	NA
UHGV-0171562_31	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0171562_32	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0171562_32	UniRef90	UniRef90_A0A3E3K2T1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0171562_32	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0171562_32	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0171562_32	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0171562_32	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0171562_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0171562_33	UniRef90	UniRef90_UPI0019616193	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0171562_33	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0171562_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0171562_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0171562_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171562_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0171562_34	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0171562_34	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0171562_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171562_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171562_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171562_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171562_34	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0171562_35	PHROG	phrog_199	holin	lysis
UHGV-0171562_35	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0171562_35	eggNOG-mapper	742738.HMPREF9460_04090	Bacteriophage holin family	NA
UHGV-0171562_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171562_35	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171562_35	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171562_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171562_36	PHROG	phrog_14030	NA	unknown function
UHGV-0171562_36	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0171562_36	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0171562_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0171562_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171562_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0171562_36	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0171562_40	PHROG	phrog_16573	NA	unknown function
UHGV-0171562_40	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0171562_40	Structural annotation	PF10651	NA	NA
UHGV-0171562_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171562_43	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0171562_43	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0171562_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171562_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171562_43	COG	COG4926	Phage-related protein	NA
UHGV-0171562_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171562_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171562_44	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0171562_44	eggNOG-mapper	1154860.SAG0136_08140	phage tail	NA
UHGV-0171562_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0171562_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171562_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0171562_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0171562_45	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0171562_45	eggNOG-mapper	458233.MCCL_1517	Phage tail tape measure protein	NA
UHGV-0171562_45	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0171562_45	Structural annotation	COG5280	NA	NA
UHGV-0171562_48	PHROG	phrog_88	major tail protein	tail
UHGV-0171562_48	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0171562_48	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0171562_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0171562_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171562_49	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0171562_49	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0171562_49	Structural annotation	TIGR01725	NA	NA
UHGV-0171562_50	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0171562_50	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0171562_51	PHROG	phrog_19734	NA	unknown function
UHGV-0171562_51	UniRef90	UniRef90_A0A3E3E563	Head-tail adaptor protein	NA
UHGV-0171562_51	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0171562_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171562_52	PHROG	phrog_2550	NA	unknown function
UHGV-0171562_52	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0171562_52	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0171562_52	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171562_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171562_53	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171562_53	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0171562_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171562_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171562_53	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171562_53	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171562_54	KOfam	K06904	NA	NA
UHGV-0171562_54	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0171562_54	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0171562_54	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0171562_54	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0171562_54	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0171562_54	COG	COG3740	Phage head maturation protease	NA
UHGV-0171562_54	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0171562_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171562_55	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0171562_55	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0171562_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171562_55	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171562_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171562_55	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0171562_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171562_56	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0171562_56	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0171562_56	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171562_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171562_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171562_56	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0171562_57	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0171562_57	UniRef90	UniRef90_UPI0004135207	P27 family phage terminase small subunit	NA
UHGV-0171562_57	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0171562_57	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171562_57	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA