UHGV-0171567

Genome information

Genome length 43,016 bps

CDS count 63

Completeness 94.84% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171567
vOTU ID	vOTU-070094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587025
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.68
Jumbo phage	No

Genome content
Genome length	43,016 bps
GC content	55.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.70%
Average CDS length	629.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171567_1	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0171567_1	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0171567_1	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0171567_1	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0171567_1	Structural annotation	PF16677	NA	NA
UHGV-0171567_2	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0171567_2	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171567_2	UniRef90	UniRef90_A0A1F7N4E5	FtsK domain-containing protein	NA
UHGV-0171567_2	eggNOG-mapper	1169143.KB911034_gene954	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0171567_2	PADLOC	SspH_00004	SspH	SSP
UHGV-0171567_2	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0171567_2	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0171567_4	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-0171567_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171567_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0171567_6	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0171567_6	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0171567_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171567_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171567_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171567_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0171567_7	UniRef90	UniRef90_A0A1Q6L0U5	SHOCT domain-containing protein	NA
UHGV-0171567_8	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0171567_9	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171567_9	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0171567_9	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0171567_9	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0171567_9	COG	COG5410	NA	NA
UHGV-0171567_9	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0171567_10	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171567_10	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-0171567_10	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171567_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171567_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171567_11	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0171567_11	UniRef90	UniRef90_A0A414B033	Phage_Mu_F domain-containing protein	NA
UHGV-0171567_11	eggNOG-mapper	1123263.AUKY01000015_gene1610	cell adhesion	NA
UHGV-0171567_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0171567_11	COG	COG2369	NA	NA
UHGV-0171567_11	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0171567_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0171567_13	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0171567_13	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0171567_13	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0171567_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0171567_15	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0171567_15	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0171567_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0171567_15	Structural annotation	TIGR01560	NA	NA
UHGV-0171567_16	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0171567_17	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0171567_18	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0171567_19	PHROG	phrog_158	major tail protein	tail
UHGV-0171567_19	UniRef90	UniRef90_D7GQN5	Phage tail protein	NA
UHGV-0171567_19	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0171567_19	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0171567_20	UniRef90	UniRef90_UPI0018A0054C	NA	NA
UHGV-0171567_20	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0171567_20	Pfam	PF16478	NA	DUF5055
UHGV-0171567_20	Structural annotation	PF16478	NA	NA
UHGV-0171567_21	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0171567_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171567_22	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0171567_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0171567_22	Structural annotation	PF09325	NA	NA
UHGV-0171567_23	PHROG	phrog_1194	NA	unknown function
UHGV-0171567_23	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0171567_23	Pfam	PF20458	NA	DUF6711
UHGV-0171567_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171567_24	PHROG	phrog_6616	tail protein	tail
UHGV-0171567_24	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0171567_24	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0171567_25	PHROG	phrog_1863	NA	unknown function
UHGV-0171567_25	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0171567_26	PHROG	phrog_443	holin	lysis
UHGV-0171567_26	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0171567_26	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0171567_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0171567_26	Structural annotation	PF16945	NA	NA
UHGV-0171567_27	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0171567_27	PHROG	phrog_7	endolysin	lysis
UHGV-0171567_27	UniRef90	UniRef90_A0A841WQ48	Lysozyme	NA
UHGV-0171567_27	eggNOG-mapper	640513.Entas_4674	lysozyme	NA
UHGV-0171567_27	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0171567_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171567_27	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0171567_27	HAMAP	MF_04110	Endolysin	NA
UHGV-0171567_27	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0171567_28	PHROG	phrog_1758	acetyltransferase	other
UHGV-0171567_28	UniRef90	UniRef90_A0A3A8Z8Z4	N-acetyltransferase	NA
UHGV-0171567_28	eggNOG-mapper	272563.CD630_29260	acetyltransferase	NA
UHGV-0171567_28	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0171567_28	Structural annotation	PF17013, MF_03130, NF000482, COG3981	NA	NA
UHGV-0171567_29	PHROG	phrog_3291	NA	unknown function
UHGV-0171567_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0171567_30	UniRef90	UniRef90_UPI001379CFC9	toxin Bro	NA
UHGV-0171567_30	eggNOG-mapper	445971.ANASTE_00727	BRO family, N-terminal domain	NA
UHGV-0171567_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0171567_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0171567_30	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0171567_31	KOfam	K14059	int; integrase	NA
UHGV-0171567_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0171567_31	UniRef90	UniRef90_A0A2V2GED4	Site-specific integrase	NA
UHGV-0171567_31	eggNOG-mapper	877414.ATWA01000052_gene2512	Belongs to the 'phage' integrase family	NA
UHGV-0171567_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171567_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171567_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171567_31	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0171567_32	PHROG	phrog_1914	NA	unknown function
UHGV-0171567_32	UniRef90	UniRef90_UPI00195D1542	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0171567_32	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0171567_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0171567_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0171567_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0171567_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171567_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171567_33	UniRef90	UniRef90_UPI0018982800	helix-turn-helix domain-containing protein	NA
UHGV-0171567_33	eggNOG-mapper	864563.HMPREF9166_1835	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171567_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171567_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171567_34	UniRef90	UniRef90_A0A3S5FBF3	HTH cro/C1-type domain-containing protein	NA
UHGV-0171567_34	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0171567_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171567_35	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0171567_35	UniRef90	UniRef90_A0A352NTP7	Oxidoreductase	NA
UHGV-0171567_35	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0171567_35	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0171567_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171567_35	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0171567_35	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0171567_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0171567_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0171567_36	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-0171567_40	Structural annotation	PF19607	NA	NA
UHGV-0171567_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171567_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0171567_42	Structural annotation	PF01381, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0171567_44	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0171567_44	UniRef90	UniRef90_A0A372V642	Adenine methyltransferase	NA
UHGV-0171567_44	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0171567_44	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0171567_44	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0171567_44	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0171567_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171567_45	Structural annotation	PF01381, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0171567_47	PHROG	phrog_408	NA	unknown function
UHGV-0171567_48	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0171567_48	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171567_48	UniRef90	UniRef90_A0A412AXA0	NA	NA
UHGV-0171567_48	eggNOG-mapper	689781.AUJX01000031_gene132	NA	NA
UHGV-0171567_48	Pfam	PF10926	NA	DUF2800
UHGV-0171567_48	COG	COG2887	RecB family exonuclease	NA
UHGV-0171567_48	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0171567_49	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171567_49	UniRef90	UniRef90_UPI001D063040	NA	NA
UHGV-0171567_49	eggNOG-mapper	394503.Ccel_3065	NA	NA
UHGV-0171567_49	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0171567_49	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0171567_50	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0171567_50	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171567_50	UniRef90	UniRef90_A0A1C5PHE9	DNA polymerase I, thermostable	NA
UHGV-0171567_50	eggNOG-mapper	1262914.BN533_00799	DNA polymerase	NA
UHGV-0171567_50	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0171567_50	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0171567_50	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0171567_51	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171567_51	UniRef90	UniRef90_UPI00101C9F44	virulence-associated E family protein	NA
UHGV-0171567_51	eggNOG-mapper	748727.CLJU_c36530	virulence-associated E family protein	NA
UHGV-0171567_51	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0171567_51	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0171567_51	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0171567_52	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171567_52	UniRef90	UniRef90_A0A559U336	VRR-NUC domain-containing protein	NA
UHGV-0171567_52	eggNOG-mapper	320836.Q4ZD25_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0171567_52	Structural annotation	PF01974, MF_01490, NF002584	NA	NA
UHGV-0171567_55	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0171567_55	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0171567_55	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0171567_55	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0171567_55	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0171567_55	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0171567_58	PHROG	phrog_474	phosphofructokinase	other
UHGV-0171567_58	UniRef90	UniRef90_A0A174YX07	NA	NA
UHGV-0171567_58	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0171567_58	Pfam	PF19905	NA	DUF6378
UHGV-0171567_60	UniRef90	UniRef90_A0A316Q6P3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0171567_60	eggNOG-mapper	552398.HMPREF0866_04581	Putative helix-turn-helix protein, YlxM / p13 like	NA
UHGV-0171567_60	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0171567_60	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0171567_61	PHROG	phrog_6721	NA	unknown function
UHGV-0171567_61	eggNOG-mapper	478749.BRYFOR_08540	NA	NA
UHGV-0171567_61	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0171567_63	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0171567_63	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171567_63	UniRef90	UniRef90_A0A4Z0QKK3	DEAD/DEAH box helicase	NA
UHGV-0171567_63	eggNOG-mapper	411902.CLOBOL_00156	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-0171567_63	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0171567_63	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0171567_63	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171567_63	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0171567_63	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA