UHGV-0171609

Genome information

Genome length 72,409 bps

CDS count 96

Completeness 99.69% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171609
vOTU ID	vOTU-077232
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591436
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.07
Jumbo phage	No

Genome content
Genome length	72,409 bps
GC content	45.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	89.42%
Average CDS length	677.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171609_1	PHROG	phrog_25468	NA	unknown function
UHGV-0171609_4	Structural annotation	PF17994	NA	NA
UHGV-0171609_5	Structural annotation	PF17212	NA	NA
UHGV-0171609_7	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0171609_7	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0171609_8	PHROG	phrog_22323	NA	unknown function
UHGV-0171609_8	eggNOG-mapper	1121098.HMPREF1534_01121	NA	NA
UHGV-0171609_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171609_10	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0171609_10	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171609_12	Structural annotation	PF02368	NA	NA
UHGV-0171609_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0171609_15	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0171609_15	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0171609_15	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0171609_15	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171609_16	PHROG	phrog_32516	NA	unknown function
UHGV-0171609_16	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0171609_16	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0171609_17	UniRef90	UniRef90_UPI001F1CD6B6	rhomboid family intramembrane serine protease	NA
UHGV-0171609_17	eggNOG-mapper	679191.HMPREF9018_0453	Rhomboid family	NA
UHGV-0171609_17	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0171609_18	PHROG	phrog_27246	NA	unknown function
UHGV-0171609_18	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0171609_21	eggNOG-mapper	1122621.ATZA01000050_gene2920	NA	NA
UHGV-0171609_22	PHROG	phrog_38431	NA	unknown function
UHGV-0171609_22	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0171609_22	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0171609_24	PHROG	phrog_28898	NA	unknown function
UHGV-0171609_24	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0171609_24	Structural annotation	PF10781	NA	NA
UHGV-0171609_25	PHROG	phrog_31654	NA	unknown function
UHGV-0171609_25	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0171609_26	PHROG	phrog_16490	NA	unknown function
UHGV-0171609_26	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0171609_26	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0171609_27	UniRef90	UniRef90_A0A8F1B604	Excisionase, terminase small subunit	NA
UHGV-0171609_27	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0171609_29	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0171609_29	PHROG	phrog_181	endolysin	lysis
UHGV-0171609_29	UniRef90	UniRef90_A0A6A7U2A4	Glycoside hydrolase family 19 protein	NA
UHGV-0171609_29	eggNOG-mapper	220664.PFL_2018	pyocin R, lytic enzyme	NA
UHGV-0171609_29	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0171609_29	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0171609_29	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0171609_30	PHROG	phrog_15037	NA	unknown function
UHGV-0171609_30	UniRef90	UniRef90_UPI001C46F9DA	phage holin family protein	NA
UHGV-0171609_30	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0171609_30	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171609_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0171609_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0171609_31	UniRef90	UniRef90_UPI001E523719	site-specific integrase	NA
UHGV-0171609_31	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0171609_31	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0171609_31	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0171609_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171609_31	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0171609_31	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0171609_32	UniRef90	UniRef90_UPI001F3A91FA	helix-turn-helix domain-containing protein	NA
UHGV-0171609_32	eggNOG-mapper	946077.W5A_12031	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171609_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171609_32	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171609_32	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171609_33	PHROG	phrog_16858	NA	unknown function
UHGV-0171609_33	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0171609_33	Structural annotation	PF08587	NA	NA
UHGV-0171609_35	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171609_35	UniRef90	UniRef90_UPI001F4423FC	recombination protein NinG	NA
UHGV-0171609_35	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0171609_35	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0171609_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171609_35	Structural annotation	PF05766	NA	NA
UHGV-0171609_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0171609_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171609_37	UniRef90	UniRef90_UPI001F328015	AAA family ATPase	NA
UHGV-0171609_37	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0171609_37	PADLOC	PbeC_00015	PbeC	PBE
UHGV-0171609_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171609_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171609_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0171609_38	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0171609_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0171609_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171609_39	UniRef90	UniRef90_UPI001F2ABE86	recombinase RecT	NA
UHGV-0171609_39	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-0171609_39	Pfam	PF03837	RecT family	RecT
UHGV-0171609_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0171609_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0171609_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0171609_40	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0171609_40	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0171609_40	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0171609_40	eggNOG-mapper	1392486.JIAF01000004_gene2638	NA	NA
UHGV-0171609_40	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0171609_40	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0171609_40	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0171609_41	PHROG	phrog_872	NA	unknown function
UHGV-0171609_41	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0171609_41	dbAPIS	APIS070	NA	NA
UHGV-0171609_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0171609_44	UniRef90	UniRef90_UPI001F322840	NA	NA
UHGV-0171609_44	eggNOG-mapper	470145.BACCOP_00755	COG NOG19098 non supervised orthologous group	NA
UHGV-0171609_44	Pfam	PF11325	NA	DUF3127
UHGV-0171609_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171609_44	Structural annotation	PF11325, MF_00720, NF005674, COG2965	NA	NA
UHGV-0171609_45	PHROG	phrog_19415	NA	unknown function
UHGV-0171609_45	UniRef90	UniRef90_A0A413BUX7	RepL domain-containing protein	NA
UHGV-0171609_45	eggNOG-mapper	762982.HMPREF9442_00538	COG NOG19076 non supervised orthologous group	NA
UHGV-0171609_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171609_45	Structural annotation	PF20024, MF_01819, NF041413, COG1959	NA	NA
UHGV-0171609_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0171609_46	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171609_46	UniRef90	UniRef90_A0A1M6ES02	DNA replication protein DnaC	NA
UHGV-0171609_46	eggNOG-mapper	679190.HMPREF0650_0106	NA	NA
UHGV-0171609_46	Pfam	PF20720	Novel STAND NTPase 3	nSTAND3
UHGV-0171609_46	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0171609_56	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0171609_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171609_56	UniRef90	UniRef90_A0A3N2NAZ8	PAPS_reduct domain-containing protein	NA
UHGV-0171609_56	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0171609_56	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0171609_56	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0171609_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171609_56	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0171609_57	PHROG	phrog_10066	NA	unknown function
UHGV-0171609_59	PHROG	phrog_874	NA	unknown function
UHGV-0171609_59	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0171609_59	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0171609_65	Structural annotation	PF17457	NA	NA
UHGV-0171609_66	PHROG	phrog_8684	NA	unknown function
UHGV-0171609_66	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-0171609_66	eggNOG-mapper	1122985.HMPREF1991_02249	YopX protein	NA
UHGV-0171609_66	Pfam	PF09643	YopX protein	YopX
UHGV-0171609_66	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0171609_69	eggNOG-mapper	1391428.V5KSB1_9CAUD	NA	NA
UHGV-0171609_70	Structural annotation	PF09560	NA	NA
UHGV-0171609_73	Structural annotation	PF14120	NA	NA
UHGV-0171609_76	UniRef90	UniRef90_A0A1Y4AP31	PcfJ-like protein	NA
UHGV-0171609_76	eggNOG-mapper	879243.Poras_1549	PcfJ-like protein	NA
UHGV-0171609_76	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171609_76	Structural annotation	PF14284	NA	NA
UHGV-0171609_77	PHROG	phrog_7445	NA	unknown function
UHGV-0171609_77	UniRef90	UniRef90_A0A8E4ZJ44	PcfK-like protein	NA
UHGV-0171609_77	eggNOG-mapper	1517682.HW49_03475	PcfK-like protein	NA
UHGV-0171609_77	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0171609_77	Structural annotation	PF14058	NA	NA
UHGV-0171609_78	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0171609_78	Structural annotation	PF14207	NA	NA
UHGV-0171609_87	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0171609_87	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171609_87	UniRef90	UniRef90_A0A646FX20	Helix-turn-helix transcriptional regulator	NA
UHGV-0171609_87	eggNOG-mapper	693979.Bache_2821	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171609_87	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171609_87	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171609_89	UniRef90	UniRef90_A0A2D3LPV5	Pilus assembly protein HicB	NA
UHGV-0171609_89	eggNOG-mapper	264731.PRU_1050	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0171609_89	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0171609_89	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0171609_91	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0171609_94	PHROG	phrog_10691	NA	unknown function
UHGV-0171609_94	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-0171609_94	eggNOG-mapper	1121447.JONL01000012_gene3405	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	NA
UHGV-0171609_94	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0171609_94	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0171609_94	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171609_94	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0171609_94	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0171609_95	eggNOG-mapper	1196322.A370_04915	NA	NA