UHGV-0171610

Genome information

Genome length 62,989 bps

CDS count 98

Completeness 100.00% (complete)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171610
vOTU ID	vOTU-046418
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591438
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.73
Jumbo phage	No

Genome content
Genome length	62,989 bps
GC content	56.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	90.48%
Average CDS length	585.15 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171610_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0171610_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0171610_1	UniRef90	UniRef90_UPI0018C2BB48	tyrosine-type recombinase/integrase	NA
UHGV-0171610_1	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0171610_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0171610_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171610_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171610_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0171610_2	PHROG	phrog_15934	NA	unknown function
UHGV-0171610_2	UniRef90	UniRef90_UPI00189B765D	tyrosine-type recombinase/integrase	NA
UHGV-0171610_2	eggNOG-mapper	1394176.AWUO01000014_gene644	NA	NA
UHGV-0171610_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0171610_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0171610_3	UniRef90	UniRef90_UPI0018C2425A	tyrosine-type recombinase/integrase	NA
UHGV-0171610_3	eggNOG-mapper	1394176.AWUO01000014_gene645	Belongs to the 'phage' integrase family	NA
UHGV-0171610_3	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0171610_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171610_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0171610_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171610_4	PHROG	phrog_19265	NA	unknown function
UHGV-0171610_4	UniRef90	UniRef90_UPI0018C22C05	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171610_4	eggNOG-mapper	1435051.BMOU_0757	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171610_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171610_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0171610_4	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0171610_5	PHROG	phrog_263	holin	lysis
UHGV-0171610_5	UniRef90	UniRef90_E0Q7A8	Putative holin, SPP1 family	NA
UHGV-0171610_5	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0171610_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0171610_6	PHROG	phrog_1397	NA	unknown function
UHGV-0171610_6	UniRef90	UniRef90_A0A6N2T369	PRTRC system protein E	NA
UHGV-0171610_6	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0171610_7	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0171610_8	PHROG	phrog_36485	NA	unknown function
UHGV-0171610_8	UniRef90	UniRef90_W4NAJ4	Leucine-rich repeat (LRR) protein	NA
UHGV-0171610_8	eggNOG-mapper	1435051.BMOU_0763	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0171610_8	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0171610_8	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0171610_8	Structural annotation	PF05895	NA	NA
UHGV-0171610_9	PHROG	phrog_1885	minor tail protein	tail
UHGV-0171610_9	UniRef90	UniRef90_A0A564VLE0	Chromosome partition protein Smc	NA
UHGV-0171610_9	eggNOG-mapper	1437603.BMON_0125	NA	NA
UHGV-0171610_10	PHROG	phrog_1885	minor tail protein	tail
UHGV-0171610_10	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0171610_10	eggNOG-mapper	35760.BCHO_0828	NA	NA
UHGV-0171610_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0171610_11	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0171610_11	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0171610_11	eggNOG-mapper	1437605.BACT_1064	NA	NA
UHGV-0171610_11	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0171610_12	PHROG	phrog_5577	minor tail protein	tail
UHGV-0171610_12	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0171610_12	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0171610_12	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0171610_13	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0171610_13	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-0171610_13	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0171610_13	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0171610_15	PHROG	phrog_36579	NA	unknown function
UHGV-0171610_16	PHROG	phrog_117	major tail protein	tail
UHGV-0171610_16	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-0171610_16	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-0171610_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0171610_17	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-0171610_17	Structural annotation	PF12691	NA	NA
UHGV-0171610_18	PHROG	phrog_32608	NA	unknown function
UHGV-0171610_18	Structural annotation	PF17395	NA	NA
UHGV-0171610_19	PHROG	phrog_25853	NA	unknown function
UHGV-0171610_19	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0171610_19	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-0171610_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0171610_20	PHROG	phrog_36776	NA	unknown function
UHGV-0171610_20	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0171610_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171610_21	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-0171610_21	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0171610_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171610_21	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0171610_22	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0171610_22	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0171610_22	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0171610_22	Structural annotation	PF02924	NA	NA
UHGV-0171610_24	PHROG	phrog_36668	NA	unknown function
UHGV-0171610_24	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0171610_24	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0171610_24	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0171610_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-0171610_25	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0171610_25	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0171610_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171610_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171610_26	UniRef90	UniRef90_A0A1D7UNS3	Phage terminase	NA
UHGV-0171610_26	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0171610_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171610_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0171610_28	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171610_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0171610_29	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171610_29	UniRef90	UniRef90_UPI0018C30812	HNH endonuclease	NA
UHGV-0171610_29	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0171610_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171610_37	PHROG	phrog_4264	NA	unknown function
UHGV-0171610_38	eggNOG-mapper	1232436.CAPF01000086_gene856	NA	NA
UHGV-0171610_40	UniRef90	UniRef90_A0A2V2D213	Immunogenic protein	NA
UHGV-0171610_42	UniRef90	UniRef90_D2Q5L4	XRE family transcriptional regulator	NA
UHGV-0171610_42	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0171610_42	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-0171610_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171610_43	eggNOG-mapper	1435051.BMOU_1230	NA	NA
UHGV-0171610_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0171610_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0171610_44	UniRef90	UniRef90_D2Q5L2	PbsX family transcriptional regulator	NA
UHGV-0171610_44	eggNOG-mapper	401473.BDP_1635	Helix-turn-helix domain	NA
UHGV-0171610_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171610_44	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0171610_48	PHROG	phrog_908	NA	unknown function
UHGV-0171610_48	eggNOG-mapper	1692.BMAGN_1534	NA	NA
UHGV-0171610_49	PHROG	phrog_16160	NA	unknown function
UHGV-0171610_49	eggNOG-mapper	1283283.ATXA01000001_gene1207	NA	NA
UHGV-0171610_49	Pfam	PF20223	NA	DUF6582
UHGV-0171610_52	UniRef90	UniRef90_UPI0018C32F08	permease	NA
UHGV-0171610_58	PHROG	phrog_21331	NA	unknown function
UHGV-0171610_58	UniRef90	UniRef90_UPI0010F86706	peptidase	NA
UHGV-0171610_61	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171610_61	UniRef90	UniRef90_A0A6I0VB33	MazG domain-containing protein	NA
UHGV-0171610_61	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0171610_61	Structural annotation	PF12643, MF_01020, NF001611, COG0140	NA	NA
UHGV-0171610_64	UniRef90	UniRef90_A0A2K9BZP4	GTP-binding protein	NA
UHGV-0171610_64	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-0171610_66	UniRef90	UniRef90_A0A1X2Z168	Tryptophan halogenase	NA
UHGV-0171610_67	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0171610_67	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-0171610_67	Structural annotation	PF01815	NA	NA
UHGV-0171610_69	UniRef90	UniRef90_UPI0010F6A35A	deoxyribodipyrimidine photolyase	NA
UHGV-0171610_70	PHROG	phrog_236	nucleotide kinase	other
UHGV-0171610_70	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-0171610_70	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0171610_71	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0171610_71	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0171610_71	UniRef90	UniRef90_UPI0018C23672	dUTP diphosphatase	NA
UHGV-0171610_71	eggNOG-mapper	1246474.ANBE01000039_gene4165	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0171610_71	Pfam	PF00692	dUTPase	dUTPase
UHGV-0171610_71	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0171610_71	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0171610_71	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0171610_73	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0171610_73	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0171610_73	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0171610_73	eggNOG-mapper	1437608.BBIA_2171	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0171610_73	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0171610_73	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0171610_74	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-0171610_75	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171610_75	eggNOG-mapper	1687.BCOR_0983	NA	NA
UHGV-0171610_75	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0171610_77	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0171610_77	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171610_77	UniRef90	UniRef90_UPI0018C2E6C0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0171610_77	eggNOG-mapper	945712.CULC22_01959	Endodeoxyribonuclease RusA	NA
UHGV-0171610_77	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0171610_77	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0171610_77	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0171610_79	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171610_79	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171610_79	UniRef90	UniRef90_UPI0018C2DD13	single-stranded DNA-binding protein	NA
UHGV-0171610_79	eggNOG-mapper	1437608.BBIA_1080	Single-stranded DNA-binding protein	NA
UHGV-0171610_79	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171610_79	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0171610_79	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171610_79	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171610_79	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0171610_81	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171610_81	UniRef90	UniRef90_UPI0018C23D26	phage recombination protein Bet	NA
UHGV-0171610_81	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0171610_81	Pfam	PF03837	RecT family	RecT
UHGV-0171610_81	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0171610_81	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0171610_81	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0171610_82	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0171610_83	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0171610_83	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-0171610_83	eggNOG-mapper	104623.Ser39006_02605	methyltransferase	NA
UHGV-0171610_83	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0171610_83	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0171610_83	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0171610_83	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0171610_87	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0171610_88	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0171610_88	PHROG	phrog_200	lipoprotein	other
UHGV-0171610_88	UniRef90	UniRef90_UPI0018C2289C	prohibitin family protein	NA
UHGV-0171610_88	eggNOG-mapper	76636.JOEC01000002_gene2577	prohibitin homologues	NA
UHGV-0171610_88	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0171610_88	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0171610_88	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0171610_92	UniRef90	UniRef90_UPI0010F9FB23	Lar family restriction alleviation protein	NA
UHGV-0171610_94	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171610_94	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0171610_94	UniRef90	UniRef90_UPI0010F53A5C	phage antirepressor KilAC domain-containing protein	NA
UHGV-0171610_94	eggNOG-mapper	1688.BCUN_0582	BRO family, N-terminal domain	NA
UHGV-0171610_94	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0171610_94	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171610_94	COG	COG3617	Prophage antirepressor	NA
UHGV-0171610_94	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0171610_96	Structural annotation	PF08667, MF_00535, NF041951, COG3655	NA	NA
UHGV-0171610_97	UniRef90	UniRef90_UPI0018DB02E9	helix-turn-helix domain-containing protein	NA
UHGV-0171610_97	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171610_97	COG	COG0457	Tetratricopeptide (TPR) repeat	NA