UHGV-0171618

Genome information

Genome length 20,694 bps

CDS count 29

Completeness 59.10% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171618
vOTU ID	vOTU-028536
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585294
BioSample	SAMN09781738
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.62
Jumbo phage	No

Genome content
Genome length	20,694 bps
GC content	61.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.37%
Average CDS length	668.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171618_2	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0171618_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171618_3	PHROG	phrog_1794	amidase	lysis
UHGV-0171618_3	UniRef90	UniRef90_A0A658JW32	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171618_3	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171618_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171618_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171618_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171618_3	Structural annotation	PF01510, PF01471, TIGR03979, COG5632, COG3409	NA	NA
UHGV-0171618_4	Structural annotation	PF09682	NA	NA
UHGV-0171618_5	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-0171618_6	eggNOG-mapper	509191.AEDB02000018_gene213	Peptidase_C39 like family	NA
UHGV-0171618_6	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0171618_7	UniRef90	UniRef90_A0A1Q6JHV6	Branched-chain amino acid ABC transporter permease	NA
UHGV-0171618_7	eggNOG-mapper	1235835.C814_01206	NA	NA
UHGV-0171618_9	PHROG	phrog_19111	NA	unknown function
UHGV-0171618_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171618_10	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0171618_10	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0171618_11	Structural annotation	PF10651	NA	NA
UHGV-0171618_13	Structural annotation	PF21683	NA	NA
UHGV-0171618_14	Structural annotation	PF20377	NA	NA
UHGV-0171618_15	PHROG	phrog_6616	tail protein	tail
UHGV-0171618_15	eggNOG-mapper	1507.HMPREF0262_01189	Phage minor structural protein	NA
UHGV-0171618_15	COG	COG4926	Phage-related protein	NA
UHGV-0171618_15	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0171618_16	PHROG	phrog_1194	NA	unknown function
UHGV-0171618_16	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0171618_16	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0171618_16	Pfam	PF20458	NA	DUF6711
UHGV-0171618_16	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171618_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171618_17	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0171618_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171618_19	eggNOG-mapper	324057.Pjdr2_1550	NA	NA
UHGV-0171618_19	Structural annotation	PF11836	NA	NA
UHGV-0171618_20	PHROG	phrog_158	major tail protein	tail
UHGV-0171618_20	UniRef90	UniRef90_A0A831TIM5	Histidine kinase	NA
UHGV-0171618_20	eggNOG-mapper	1414720.CBYM010000002_gene566	Phage tail tube protein	NA
UHGV-0171618_20	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0171618_20	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0171618_21	Structural annotation	PF12691	NA	NA
UHGV-0171618_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171618_22	UniRef90	UniRef90_UPI000476ED54	HK97 gp10 family phage protein	NA
UHGV-0171618_22	eggNOG-mapper	1122919.KB905559_gene1352	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171618_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171618_23	UniRef90	UniRef90_A0A3D4EHM1	Head-tail adaptor protein	NA
UHGV-0171618_23	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0171618_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171618_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171618_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171618_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171618_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0171618_24	UniRef90	UniRef90_A0A8J6JAY9	Phage gp6-like head-tail connector protein	NA
UHGV-0171618_24	eggNOG-mapper	1348908.KI518589_gene2534	Phage gp6-like head-tail connector protein	NA
UHGV-0171618_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0171618_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171618_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171618_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171618_25	UniRef90	UniRef90_A0A3D4EJL4	Phage major capsid protein	NA
UHGV-0171618_25	eggNOG-mapper	411902.CLOBOL_03879	Phage capsid family	NA
UHGV-0171618_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171618_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171618_25	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171618_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171618_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171618_26	UniRef90	UniRef90_A0A3D4EJM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0171618_26	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0171618_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171618_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171618_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0171618_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171618_27	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0171618_27	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0171618_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171618_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171618_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171618_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171618_29	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0171618_29	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0171618_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171618_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA