UHGV-0171625

Genome information

Genome length 25,359 bps

CDS count 36

Completeness 57.33% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171625
vOTU ID	vOTU-028537
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585285
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.6
Jumbo phage	No

Genome content
Genome length	25,359 bps
GC content	44.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.98%
Average CDS length	664.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171625_1	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0171625_1	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0171625_1	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0171625_1	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0171625_1	Structural annotation	PF16677	NA	NA
UHGV-0171625_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171625_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0171625_2	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0171625_2	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0171625_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171625_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0171625_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171625_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171625_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171625_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171625_3	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0171625_3	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0171625_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171625_4	PHROG	phrog_14030	NA	unknown function
UHGV-0171625_4	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0171625_4	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0171625_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171625_5	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0171625_5	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0171625_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171625_5	COG	COG2369	NA	NA
UHGV-0171625_5	Structural annotation	PF06152	NA	NA
UHGV-0171625_6	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0171625_6	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0171625_7	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0171625_7	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0171625_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0171625_7	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0171625_8	PHROG	phrog_21718	NA	unknown function
UHGV-0171625_8	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0171625_10	PHROG	phrog_9288	NA	unknown function
UHGV-0171625_10	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0171625_11	PHROG	phrog_20016	NA	unknown function
UHGV-0171625_11	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0171625_11	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0171625_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171625_12	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0171625_14	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0171625_15	PHROG	phrog_247	major head protein	head and packaging
UHGV-0171625_15	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0171625_15	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0171625_15	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0171625_15	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0171625_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0171625_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0171625_17	PHROG	phrog_1233	NA	unknown function
UHGV-0171625_17	eggNOG-mapper	476272.RUMHYD_01960	NA	NA
UHGV-0171625_17	Pfam	PF11350	NA	DUF3152
UHGV-0171625_18	PHROG	phrog_18218	NA	unknown function
UHGV-0171625_18	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0171625_18	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0171625_18	Structural annotation	PF06946	NA	NA
UHGV-0171625_20	PHROG	phrog_8680	NA	unknown function
UHGV-0171625_20	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0171625_20	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0171625_20	Pfam	PF14386	NA	DUF4417
UHGV-0171625_20	Structural annotation	PF14386	NA	NA
UHGV-0171625_22	PHROG	phrog_3366	NA	unknown function
UHGV-0171625_22	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0171625_22	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0171625_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0171625_24	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0171625_24	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0171625_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0171625_24	Structural annotation	PF11114	NA	NA
UHGV-0171625_25	PHROG	phrog_3266	tail completion	connector
UHGV-0171625_25	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0171625_25	Structural annotation	PF12691	NA	NA
UHGV-0171625_26	PHROG	phrog_3099	NA	unknown function
UHGV-0171625_26	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0171625_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0171625_27	PHROG	phrog_11299	NA	unknown function
UHGV-0171625_27	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0171625_27	Structural annotation	PF10666	NA	NA
UHGV-0171625_28	PHROG	phrog_706	NA	unknown function
UHGV-0171625_28	UniRef90	UniRef90_UPI00192502EA	Gp15 family bacteriophage protein	NA
UHGV-0171625_28	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0171625_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0171625_28	Structural annotation	PF06854	NA	NA
UHGV-0171625_29	PHROG	phrog_37543	NA	unknown function
UHGV-0171625_29	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0171625_29	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0171625_29	COG	COG5412	Phage-related protein	NA
UHGV-0171625_30	PHROG	phrog_1194	NA	unknown function
UHGV-0171625_30	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0171625_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171625_31	PHROG	phrog_32744	NA	unknown function
UHGV-0171625_31	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0171625_31	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0171625_32	PHROG	phrog_18725	NA	unknown function
UHGV-0171625_32	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0171625_33	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0171625_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171625_35	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0171625_35	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0171625_35	Structural annotation	PF03425, NF033675	NA	NA