UHGV-0171637

Genome information

Genome length 36,033 bps

CDS count 64

Completeness 85.17% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171637
vOTU ID	vOTU-028538
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592488
BioSample	SAMN09781743
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.85
Jumbo phage	No

Genome content
Genome length	36,033 bps
GC content	53.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.37%
Average CDS length	519.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171637_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171637_1	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0171637_1	COG	COG1511	NA	NA
UHGV-0171637_2	PHROG	phrog_1194	NA	unknown function
UHGV-0171637_2	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0171637_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171637_3	PHROG	phrog_13879	NA	unknown function
UHGV-0171637_3	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0171637_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0171637_5	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0171637_5	PHROG	phrog_11157	NA	unknown function
UHGV-0171637_5	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0171637_5	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0171637_5	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0171637_5	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0171637_5	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0171637_5	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0171637_5	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0171637_6	PHROG	phrog_18725	NA	unknown function
UHGV-0171637_6	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0171637_6	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0171637_6	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0171637_8	PHROG	phrog_2295	NA	unknown function
UHGV-0171637_8	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0171637_8	Structural annotation	PF21722	NA	NA
UHGV-0171637_11	PHROG	phrog_2310	NA	unknown function
UHGV-0171637_11	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0171637_13	Structural annotation	PF08481, NF033814, COG2372	NA	NA
UHGV-0171637_14	KOfam	K13023	CPN2; carboxypeptidase N regulatory subunit	NA
UHGV-0171637_14	PHROG	phrog_35892	NA	unknown function
UHGV-0171637_14	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0171637_14	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0171637_14	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0171637_15	PHROG	phrog_4105	NA	unknown function
UHGV-0171637_15	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0171637_15	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0171637_16	PHROG	phrog_1129	holin	lysis
UHGV-0171637_16	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0171637_16	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0171637_16	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0171637_16	Structural annotation	PF06946	NA	NA
UHGV-0171637_17	PHROG	phrog_435	endolysin	lysis
UHGV-0171637_17	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0171637_17	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171637_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171637_17	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0171637_19	PHROG	phrog_3754	NA	unknown function
UHGV-0171637_19	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0171637_20	PHROG	phrog_21718	NA	unknown function
UHGV-0171637_20	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0171637_21	PHROG	phrog_22984	NA	unknown function
UHGV-0171637_22	PHROG	phrog_16490	NA	unknown function
UHGV-0171637_22	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171637_23	PHROG	phrog_20016	NA	unknown function
UHGV-0171637_23	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0171637_23	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0171637_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171637_24	PHROG	phrog_28802	NA	unknown function
UHGV-0171637_24	Structural annotation	PF12510	NA	NA
UHGV-0171637_25	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0171637_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171637_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0171637_26	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0171637_26	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0171637_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171637_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0171637_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171637_26	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0171637_27	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0171637_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171637_27	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0171637_31	UniRef90	UniRef90_A0A1C5WZX8	HTH-type transcriptional regulator PuuR	NA
UHGV-0171637_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171637_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171637_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171637_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171637_32	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0171637_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171637_32	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0171637_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171637_34	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0171637_36	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0171637_36	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0171637_36	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0171637_36	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0171637_36	Structural annotation	PF05565	NA	NA
UHGV-0171637_37	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171637_37	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0171637_37	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0171637_37	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0171637_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171637_38	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171637_38	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171637_38	Structural annotation	PF05772	NA	NA
UHGV-0171637_40	PHROG	phrog_7566	NA	unknown function
UHGV-0171637_40	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0171637_40	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0171637_41	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0171637_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171637_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171637_42	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0171637_42	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0171637_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171637_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171637_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171637_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171637_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171637_43	PHROG	phrog_15768	NA	unknown function
UHGV-0171637_43	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0171637_43	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0171637_43	Pfam	PF19808	NA	DUF6291
UHGV-0171637_43	Structural annotation	PF19808	NA	NA
UHGV-0171637_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171637_45	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0171637_45	eggNOG-mapper	553220.CAMGR0001_2115	NA	NA
UHGV-0171637_45	Pfam	PF06356	NA	DUF1064
UHGV-0171637_45	Structural annotation	PF06356	NA	NA
UHGV-0171637_46	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0171637_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171637_46	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0171637_46	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0171637_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0171637_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171637_46	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0171637_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0171637_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0171637_48	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171637_48	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0171637_48	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0171637_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0171637_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171637_50	PHROG	phrog_38832	NA	unknown function
UHGV-0171637_50	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0171637_54	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0171637_55	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0171637_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0171637_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171637_56	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0171637_56	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0171637_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171637_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171637_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171637_58	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0171637_58	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0171637_58	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0171637_58	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0171637_58	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0171637_58	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0171637_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171637_58	COG	COG0863	DNA modification methylase	NA
UHGV-0171637_58	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0171637_60	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171637_60	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0171637_60	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0171637_60	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0171637_60	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171637_60	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171637_60	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171637_60	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171637_61	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171637_61	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0171637_61	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0171637_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171637_61	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171637_62	PHROG	phrog_28328	NA	unknown function
UHGV-0171637_62	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0171637_63	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171637_63	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0171637_63	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0171637_63	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171637_63	COG	COG2369	NA	NA
UHGV-0171637_63	Structural annotation	PF06152	NA	NA