UHGV-0171638

Genome information

Genome length 40,940 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171638
vOTU ID	vOTU-006342
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587018
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.93
Jumbo phage	No

Genome content
Genome length	40,940 bps
GC content	53.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.85%
Average CDS length	616.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171638_1	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0171638_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171638_4	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0171638_4	UniRef90	UniRef90_G4KR97	Terminase_3 domain-containing protein	NA
UHGV-0171638_4	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0171638_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171638_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171638_4	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171638_5	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0171638_5	Structural annotation	PF11650	NA	NA
UHGV-0171638_6	PHROG	phrog_14606	NA	unknown function
UHGV-0171638_6	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0171638_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0171638_7	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0171638_7	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0171638_7	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0171638_7	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171638_8	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0171638_8	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0171638_8	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0171638_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171638_10	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0171638_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171638_11	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0171638_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171638_12	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0171638_12	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0171638_12	Pfam	PF19789	NA	DUF6273
UHGV-0171638_12	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0171638_12	Structural annotation	PF19789	NA	NA
UHGV-0171638_14	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0171638_15	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0171638_16	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0171638_16	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0171638_16	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0171638_16	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0171638_17	PHROG	phrog_937	hemolysin	other
UHGV-0171638_17	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0171638_18	PHROG	phrog_443	holin	lysis
UHGV-0171638_18	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0171638_18	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0171638_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0171638_18	Structural annotation	PF16945	NA	NA
UHGV-0171638_19	PHROG	phrog_14030	NA	unknown function
UHGV-0171638_19	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-0171638_19	eggNOG-mapper	887325.HMPREF0381_0057	Putative cell wall binding repeat	NA
UHGV-0171638_19	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0171638_20	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0171638_23	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0171638_24	KOfam	K14059	int; integrase	NA
UHGV-0171638_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0171638_24	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0171638_24	eggNOG-mapper	411467.BACCAP_00889	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0171638_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171638_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171638_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0171638_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171638_25	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0171638_27	UniRef90	UniRef90_A0A329UR16	HTH cro/C1-type domain-containing protein	NA
UHGV-0171638_27	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0171638_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171638_29	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0171638_29	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0171638_29	eggNOG-mapper	575605.ACQN01000023_gene710	Helix-turn-helix domain	NA
UHGV-0171638_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171638_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171638_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171638_30	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0171638_31	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0171638_31	UniRef90	UniRef90_A0A3Q0NDY7	HTH cro/C1-type domain-containing protein	NA
UHGV-0171638_31	eggNOG-mapper	386043.lwe1198	Helix-turn-helix	NA
UHGV-0171638_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171638_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171638_32	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0171638_32	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0171638_34	Pfam	PF09466	Hypothetical protein Yqai	Yqai
UHGV-0171638_35	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171638_35	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-0171638_35	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0171638_35	Pfam	PF06378	NA	DUF1071
UHGV-0171638_35	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0171638_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171638_36	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0171638_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0171638_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171638_37	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171638_37	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171638_37	Pfam	PF05772	NinB protein	NinB
UHGV-0171638_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0171638_38	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171638_38	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0171638_38	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0171638_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171638_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171638_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171638_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171638_40	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0171638_40	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0171638_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171638_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171638_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171638_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171638_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171638_41	PHROG	phrog_15768	NA	unknown function
UHGV-0171638_41	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0171638_41	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0171638_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0171638_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171638_44	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0171638_44	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0171638_44	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0171638_44	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0171638_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171638_44	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0171638_46	PHROG	phrog_3136	NA	unknown function
UHGV-0171638_46	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0171638_46	Pfam	PF04266	ASCH domain	ASCH
UHGV-0171638_46	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0171638_46	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0171638_47	PHROG	phrog_4019	NA	unknown function
UHGV-0171638_48	PHROG	phrog_38832	NA	unknown function
UHGV-0171638_48	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0171638_48	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0171638_54	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0171638_54	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0171638_54	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0171638_55	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171638_55	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0171638_55	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0171638_58	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0171638_58	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-0171638_58	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0171638_58	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0171638_58	Structural annotation	PF18909	NA	NA
UHGV-0171638_59	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0171638_59	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA