UHGV-0171666

Genome information

Genome length 45,316 bps

CDS count 72

Completeness 98.28% (high-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171666
vOTU ID	vOTU-066982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579418
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.23
Jumbo phage	No

Genome content
Genome length	45,316 bps
GC content	55.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.25%
Average CDS length	566.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171666_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0171666_3	PHROG	phrog_291	endolysin	lysis
UHGV-0171666_3	UniRef90	UniRef90_N9XS33	PG_binding_1 domain-containing protein	NA
UHGV-0171666_3	eggNOG-mapper	999411.HMPREF1092_03301	family 25	NA
UHGV-0171666_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171666_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0171666_3	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0171666_4	PHROG	phrog_6918	holin	lysis
UHGV-0171666_4	UniRef90	UniRef90_A0A847VZ28	Holin	NA
UHGV-0171666_4	eggNOG-mapper	1519439.JPJG01000059_gene1950	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0171666_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0171666_4	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0171666_5	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0171666_5	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0171666_8	Structural annotation	PF02255, TIGR00823, COG1447	NA	NA
UHGV-0171666_9	eggNOG-mapper	1408324.JNJK01000028_gene1590	NA	NA
UHGV-0171666_10	Structural annotation	PF16734, PF01402	NA	NA
UHGV-0171666_11	KOfam	K14059	int; integrase	NA
UHGV-0171666_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0171666_11	UniRef90	UniRef90_A0A328U998	Site-specific integrase	NA
UHGV-0171666_11	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0171666_11	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171666_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171666_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171666_11	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0171666_13	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0171666_13	PHROG	phrog_19856	NA	unknown function
UHGV-0171666_13	UniRef90	UniRef90_A0A2Z4QA31	Restriction endonuclease	NA
UHGV-0171666_13	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0171666_13	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0171666_13	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0171666_13	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0171666_15	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0171666_21	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0171666_26	Pfam	PF04255	NA	DUF433
UHGV-0171666_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0171666_27	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0171666_29	PHROG	phrog_474	phosphofructokinase	other
UHGV-0171666_29	UniRef90	UniRef90_A0A2D9CDM9	NA	NA
UHGV-0171666_29	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0171666_29	Pfam	PF19905	NA	DUF6378
UHGV-0171666_29	Structural annotation	PF19905	NA	NA
UHGV-0171666_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0171666_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0171666_30	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171666_30	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0171666_30	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0171666_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0171666_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0171666_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171666_30	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0171666_31	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0171666_31	UniRef90	UniRef90_A0A373KMH1	NAD(P)-dependent oxidoreductase	NA
UHGV-0171666_31	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0171666_31	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0171666_31	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0171666_44	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0171666_44	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0171666_44	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-0171666_44	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0171666_44	Pfam	PF12684	NA	DUF3799
UHGV-0171666_44	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0171666_44	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0171666_46	PHROG	phrog_3657	NA	unknown function
UHGV-0171666_46	eggNOG-mapper	1567013.A0A0A7S0A9_9CAUD	NA	NA
UHGV-0171666_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171666_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171666_47	UniRef90	UniRef90_A0A2U1BEJ1	Single-stranded DNA-binding protein	NA
UHGV-0171666_47	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0171666_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171666_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171666_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171666_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171666_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171666_48	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0171666_48	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0171666_48	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0171666_48	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0171666_48	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0171666_49	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0171666_49	PHROG	phrog_11992	NA	unknown function
UHGV-0171666_49	UniRef90	UniRef90_A0A845N2C1	DNA primase	NA
UHGV-0171666_49	eggNOG-mapper	718252.FP2_18240	CHC2 zinc finger	NA
UHGV-0171666_49	PADLOC	drt-cluster192	DRT	DRT
UHGV-0171666_49	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0171666_49	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0171666_49	Structural annotation	PF01807	NA	NA
UHGV-0171666_50	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0171666_50	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0171666_50	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0171666_50	Pfam	PF06048	NA	DUF927
UHGV-0171666_50	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0171666_50	COG	COG5519	NA	NA
UHGV-0171666_50	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0171666_51	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0171666_51	Structural annotation	PF16677	NA	NA
UHGV-0171666_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171666_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0171666_56	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0171666_56	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0171666_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171666_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171666_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171666_56	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0171666_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171666_57	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0171666_57	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0171666_57	COG	COG5410	NA	NA
UHGV-0171666_57	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0171666_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171666_58	UniRef90	UniRef90_A0A7X9GQD9	Phage portal protein (Fragment)	NA
UHGV-0171666_58	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171666_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171666_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171666_59	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0171666_59	Structural annotation	PF14265	NA	NA
UHGV-0171666_60	PHROG	phrog_247	major head protein	head and packaging
UHGV-0171666_60	UniRef90	UniRef90_UPI000A1C9CC1	coat protein	NA
UHGV-0171666_60	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0171666_60	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0171666_60	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0171666_61	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0171666_61	Structural annotation	TIGR01560	NA	NA
UHGV-0171666_62	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0171666_63	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0171666_64	Pfam	PF20765	NA	DUF6838
UHGV-0171666_64	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0171666_65	PHROG	phrog_158	major tail protein	tail
UHGV-0171666_65	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-0171666_65	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0171666_66	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0171666_68	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171666_68	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0171666_68	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171666_69	PHROG	phrog_1194	NA	unknown function
UHGV-0171666_69	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0171666_69	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0171666_70	PHROG	phrog_13879	NA	unknown function
UHGV-0171666_70	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0171666_70	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0171666_71	eggNOG-mapper	756499.Desde_2424	NA	NA
UHGV-0171666_72	COG	COG5301	Phage-related tail fiber protein	NA