UHGV-0171698

Genome information

vOTU vOTU-019717

Genome length 37,808 bps

CDS count 54

Completeness 61.50% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171698
vOTU ID	vOTU-019717
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574821
BioSample	NA
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.33
Jumbo phage	No

Genome content
Genome length	37,808 bps
GC content	55.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.91%
Average CDS length	653.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171698_1	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0171698_1	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0171698_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171698_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0171698_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171698_2	UniRef90	UniRef90_UPI0018982ECF	terminase large subunit	NA
UHGV-0171698_2	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0171698_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171698_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171698_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171698_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171698_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171698_3	UniRef90	UniRef90_UPI0018989A28	phage portal protein	NA
UHGV-0171698_3	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0171698_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171698_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171698_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171698_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0171698_4	KOfam	K06904	NA	NA
UHGV-0171698_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0171698_4	UniRef90	UniRef90_UPI0018981ADD	HK97 family phage prohead protease	NA
UHGV-0171698_4	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0171698_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0171698_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0171698_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0171698_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171698_5	UniRef90	UniRef90_UPI001898B939	phage major capsid protein	NA
UHGV-0171698_5	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0171698_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171698_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171698_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171698_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171698_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0171698_6	UniRef90	UniRef90_UPI0018979B98	head-tail connector protein	NA
UHGV-0171698_6	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-0171698_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171698_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171698_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171698_7	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0171698_7	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0171698_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171698_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171698_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171698_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171698_8	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0171698_8	Structural annotation	PF05657	NA	NA
UHGV-0171698_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171698_9	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0171698_9	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0171698_9	Structural annotation	TIGR01725	NA	NA
UHGV-0171698_10	PHROG	phrog_88	major tail protein	tail
UHGV-0171698_10	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0171698_10	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0171698_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0171698_11	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0171698_14	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0171698_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0171698_14	UniRef90	UniRef90_UPI00189B6D86	phage tail tape measure protein	NA
UHGV-0171698_14	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0171698_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171698_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171698_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0171698_14	Structural annotation	PF10145, PF09486, PF05816, TIGR01760, TIGR03017, COG3853	NA	NA
UHGV-0171698_15	eggNOG-mapper	1203606.HMPREF1526_00969	NA	NA
UHGV-0171698_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171698_16	PHROG	phrog_13879	NA	unknown function
UHGV-0171698_16	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-0171698_16	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0171698_17	PHROG	phrog_18725	NA	unknown function
UHGV-0171698_17	eggNOG-mapper	1203606.HMPREF1526_00967	Concanavalin A-like lectin/glucanases superfamily	NA
UHGV-0171698_17	COG	COG3209	NA	NA
UHGV-0171698_18	UniRef90	UniRef90_A0A396Q5D6	H_lectin domain-containing protein	NA
UHGV-0171698_19	PHROG	phrog_7809	tail fiber protein	tail
UHGV-0171698_20	PHROG	phrog_7809	tail fiber protein	tail
UHGV-0171698_21	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0171698_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0171698_21	UniRef90	UniRef90_A0A417W5K3	Integrase	NA
UHGV-0171698_21	eggNOG-mapper	1235835.C814_01938	Belongs to the 'phage' integrase family	NA
UHGV-0171698_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0171698_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171698_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0171698_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0171698_23	PHROG	phrog_1382	NA	unknown function
UHGV-0171698_23	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0171698_24	PHROG	phrog_199	holin	lysis
UHGV-0171698_24	UniRef90	UniRef90_UPI00189A7512	phage holin family protein	NA
UHGV-0171698_24	eggNOG-mapper	1121333.JMLH01000047_gene1005	Bacteriophage holin family	NA
UHGV-0171698_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171698_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171698_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171698_25	KOfam	K24076	PGRP-LB; peptidoglycan-recognition protein LB [EC:3.5.1.28]	NA
UHGV-0171698_25	PHROG	phrog_35436	amidase	lysis
UHGV-0171698_25	UniRef90	UniRef90_UPI00189BCEE8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171698_25	eggNOG-mapper	553973.CLOHYLEM_07195	Ami_2	NA
UHGV-0171698_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0171698_25	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0171698_25	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0171698_26	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171698_26	UniRef90	UniRef90_A0A1C6K8Q1	Abortive infection bacteriophage resistance protein	NA
UHGV-0171698_26	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0171698_26	PADLOC	AbiD	AbiD	Abi
UHGV-0171698_26	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0171698_26	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0171698_26	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0171698_27	KOfam	K14059	int; integrase	NA
UHGV-0171698_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0171698_27	UniRef90	UniRef90_A0A417EXG7	Site-specific integrase	NA
UHGV-0171698_27	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0171698_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171698_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171698_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171698_29	UniRef90	UniRef90_UPI00156DF264	FxLYD domain-containing protein	NA
UHGV-0171698_29	eggNOG-mapper	1408323.JQKK01000024_gene1319	NA	NA
UHGV-0171698_29	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0171698_29	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0171698_30	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0171698_30	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0171698_30	UniRef90	UniRef90_UPI001A9AEEA3	helix-turn-helix domain-containing protein	NA
UHGV-0171698_30	eggNOG-mapper	1095750.HMPREF9970_1005	Helix-turn-helix domain	NA
UHGV-0171698_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171698_30	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0171698_30	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0171698_30	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0171698_32	Structural annotation	PF11112	NA	NA
UHGV-0171698_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0171698_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171698_35	UniRef90	UniRef90_UPI001D0E8FB8	AAA family ATPase	NA
UHGV-0171698_35	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0171698_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171698_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171698_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0171698_36	PHROG	phrog_862	NA	unknown function
UHGV-0171698_36	eggNOG-mapper	1161935.H9D1E9_9CAUD	NA	NA
UHGV-0171698_36	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0171698_37	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0171698_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0171698_37	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0171698_37	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0171698_37	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0171698_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0171698_37	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0171698_39	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0171698_39	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0171698_39	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0171698_40	PHROG	phrog_1029	NA	unknown function
UHGV-0171698_40	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0171698_40	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0171698_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171698_41	UniRef90	UniRef90_A0A417TSI7	NA	NA
UHGV-0171698_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0171698_42	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0171698_42	UniRef90	UniRef90_A0A396QBH7	Nucleotide pyrophosphohydrolase	NA
UHGV-0171698_42	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0171698_42	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0171698_42	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0171698_42	Structural annotation	PF03819, MF_01019, NF008986, COG1694	NA	NA
UHGV-0171698_44	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171698_44	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0171698_44	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0171698_44	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0171698_44	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0171698_44	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0171698_47	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0171698_47	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0171698_47	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0171698_48	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0171698_48	Pfam	PF04448	NA	DUF551
UHGV-0171698_48	Structural annotation	PF04448	NA	NA
UHGV-0171698_50	PHROG	phrog_3777	NA	unknown function
UHGV-0171698_50	UniRef90	UniRef90_UPI001D08CA4B	NA	NA
UHGV-0171698_50	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-0171698_50	Pfam	PF12957	NA	DUF3846
UHGV-0171698_50	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0171698_50	Structural annotation	PF12957	NA	NA
UHGV-0171698_51	PHROG	phrog_774	NA	unknown function
UHGV-0171698_51	eggNOG-mapper	1042156.CXIVA_01820	NA	NA
UHGV-0171698_53	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0171698_53	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0171698_53	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0171698_54	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171698_54	UniRef90	UniRef90_UPI001897DF0D	HNH endonuclease	NA
UHGV-0171698_54	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0171698_54	Pfam	PF01844	HNH endonuclease	HNH