UHGV-0171703

Genome information

Genome length 46,936 bps

CDS count 72

Completeness 95.37% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171703
vOTU ID	vOTU-009257
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587023
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.04
Jumbo phage	No

Genome content
Genome length	46,936 bps
GC content	43.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.54%
Average CDS length	607.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171703_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171703_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0171703_1	UniRef90	UniRef90_UPI00189B3E27	recombinase family protein	NA
UHGV-0171703_1	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0171703_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171703_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0171703_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171703_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0171703_2	eggNOG-mapper	887325.HMPREF0381_0380	NA	NA
UHGV-0171703_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171703_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0171703_3	UniRef90	UniRef90_A0A3E5AQC7	Helix-turn-helix domain-containing protein	NA
UHGV-0171703_3	eggNOG-mapper	478749.BRYFOR_07503	DNA-binding helix-turn-helix protein	NA
UHGV-0171703_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0171703_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171703_3	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0171703_9	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171703_9	PHROG	phrog_14642	endolysin	lysis
UHGV-0171703_9	UniRef90	UniRef90_A0A1G6B328	Cell Wall Hydrolase	NA
UHGV-0171703_9	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0171703_9	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0171703_9	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0171703_9	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0171703_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171703_13	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0171703_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0171703_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0171703_14	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0171703_14	eggNOG-mapper	1089549.AZUQ01000001_gene1870	RNase H	NA
UHGV-0171703_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0171703_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0171703_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0171703_15	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0171703_16	PHROG	phrog_4433	NA	unknown function
UHGV-0171703_16	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0171703_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171703_16	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0171703_17	PHROG	phrog_8470	NA	unknown function
UHGV-0171703_17	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0171703_17	eggNOG-mapper	1235799.C818_00266	PcfJ-like protein	NA
UHGV-0171703_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171703_17	Structural annotation	PF14284	NA	NA
UHGV-0171703_19	PHROG	phrog_15077	NA	unknown function
UHGV-0171703_19	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0171703_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0171703_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0171703_20	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0171703_20	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0171703_20	Structural annotation	NF041588	NA	NA
UHGV-0171703_21	PHROG	phrog_7566	NA	unknown function
UHGV-0171703_21	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0171703_22	UniRef90	UniRef90_UPI00189B0B3D	NA	NA
UHGV-0171703_22	eggNOG-mapper	1410668.JNKC01000004_gene297	NA	NA
UHGV-0171703_22	Pfam	PF14199	NA	DUF4317
UHGV-0171703_22	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0171703_23	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0171703_23	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0171703_23	UniRef90	UniRef90_UPI001898C2C6	N-6 DNA methylase	NA
UHGV-0171703_23	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0171703_23	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0171703_23	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0171703_23	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0171703_23	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0171703_24	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0171703_24	PHROG	phrog_2668	NA	unknown function
UHGV-0171703_24	UniRef90	UniRef90_UPI001923DEFA	restriction endonuclease subunit S	NA
UHGV-0171703_24	eggNOG-mapper	1201292.DR75_1653	Type I restriction modification DNA specificity domain	NA
UHGV-0171703_24	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0171703_24	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0171703_25	eggNOG-mapper	397290.C810_05193	NA	NA
UHGV-0171703_28	PHROG	phrog_874	NA	unknown function
UHGV-0171703_28	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0171703_28	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0171703_28	Structural annotation	PF04266, MF_00684, NF003443, COG3097	NA	NA
UHGV-0171703_30	PHROG	phrog_4292	NA	unknown function
UHGV-0171703_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171703_33	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0171703_33	Structural annotation	PF02996	NA	NA
UHGV-0171703_34	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0171703_34	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0171703_34	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0171703_34	eggNOG-mapper	1235793.C809_02657	NA	NA
UHGV-0171703_34	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0171703_34	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0171703_35	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0171703_35	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0171703_35	UniRef90	UniRef90_UPI0018997C56	phage terminase large subunit family protein	NA
UHGV-0171703_35	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-0171703_35	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0171703_35	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0171703_35	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0171703_35	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0171703_35	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0171703_36	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0171703_36	Structural annotation	PF19645	NA	NA
UHGV-0171703_37	PHROG	phrog_21	portal protein	head and packaging
UHGV-0171703_37	UniRef90	UniRef90_UPI00189A0052	phage portal protein	NA
UHGV-0171703_37	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-0171703_37	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0171703_37	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0171703_37	COG	COG5511	Phage capsid protein	NA
UHGV-0171703_37	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0171703_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171703_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171703_38	UniRef90	UniRef90_UPI0018996958	Clp protease ClpP	NA
UHGV-0171703_38	eggNOG-mapper	1169144.KB910924_gene337	Serine dehydrogenase proteinase	NA
UHGV-0171703_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171703_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171703_38	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0171703_39	Structural annotation	PF02924	NA	NA
UHGV-0171703_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171703_40	UniRef90	UniRef90_UPI00189A2839	major capsid protein	NA
UHGV-0171703_40	eggNOG-mapper	1203606.HMPREF1526_01904	Phage major capsid protein E	NA
UHGV-0171703_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171703_40	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0171703_42	PHROG	phrog_2551	minor tail protein	tail
UHGV-0171703_42	Structural annotation	PF13856	NA	NA
UHGV-0171703_43	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0171703_43	UniRef90	UniRef90_UPI0018995B39	phage tail protein	NA
UHGV-0171703_43	eggNOG-mapper	1235793.C809_02666	Prophage minor tail protein Z (GPZ)	NA
UHGV-0171703_43	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0171703_43	Structural annotation	PF06763	NA	NA
UHGV-0171703_44	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0171703_45	PHROG	phrog_17039	NA	unknown function
UHGV-0171703_46	PHROG	phrog_23	tail sheath	tail
UHGV-0171703_46	UniRef90	UniRef90_A0A7U9RTU3	Putative prophage major tail sheath protein	NA
UHGV-0171703_46	eggNOG-mapper	1235793.C809_02669	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0171703_46	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0171703_46	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0171703_47	KOfam	K06908	NA	NA
UHGV-0171703_47	PHROG	phrog_55	head closure	connector
UHGV-0171703_47	UniRef90	UniRef90_UPI00189A6CD3	phage major tail tube protein	NA
UHGV-0171703_47	eggNOG-mapper	665959.HMPREF1013_00835	Tail protein	NA
UHGV-0171703_47	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0171703_47	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0171703_47	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0171703_48	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0171703_48	eggNOG-mapper	97139.C824_03371	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0171703_48	Structural annotation	PF10109	NA	NA
UHGV-0171703_50	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0171703_50	UniRef90	UniRef90_UPI0018992E5D	phage tail tape measure protein	NA
UHGV-0171703_50	eggNOG-mapper	887325.HMPREF0381_0396	Phage-related minor tail protein	NA
UHGV-0171703_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171703_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171703_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0171703_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0171703_51	PHROG	phrog_46	tail protein	tail
UHGV-0171703_51	UniRef90	UniRef90_UPI0018994A5C	tail protein X	NA
UHGV-0171703_51	eggNOG-mapper	1227268.HMPREF1552_01573	Phage Tail Protein X	NA
UHGV-0171703_51	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0171703_51	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0171703_51	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0171703_52	KOfam	K06905	NA	NA
UHGV-0171703_52	PHROG	phrog_52	tail protein	tail
UHGV-0171703_52	UniRef90	UniRef90_UPI001D020CDE	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0171703_52	eggNOG-mapper	1235793.C809_02674	Lysin motif	NA
UHGV-0171703_52	COG	COG3500	NA	NA
UHGV-0171703_52	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0171703_53	eggNOG-mapper	478749.BRYFOR_07550	Baseplate assembly protein	NA
UHGV-0171703_53	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0171703_53	Structural annotation	PF05606, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0171703_54	KOfam	K06906	NA	NA
UHGV-0171703_54	PHROG	phrog_76	tail protein	tail
UHGV-0171703_54	UniRef90	UniRef90_UPI001897DFD2	phage tail protein	NA
UHGV-0171703_54	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0171703_54	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0171703_54	Pfam	PF01476	LysM domain	LysM
UHGV-0171703_54	COG	COG3499	NA	NA
UHGV-0171703_54	Structural annotation	PF06995, PF05489, MF_02014, TIGR01633, NF010723, COG3499, COG1388	NA	NA
UHGV-0171703_55	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0171703_56	PHROG	phrog_6	baseplate protein	tail
UHGV-0171703_56	UniRef90	UniRef90_UPI00189A496D	baseplate J/gp47 family protein	NA
UHGV-0171703_56	eggNOG-mapper	1235835.C814_01197	Baseplate J-like protein	NA
UHGV-0171703_56	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0171703_56	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0171703_56	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0171703_57	PHROG	phrog_14404	baseplate protein	tail
UHGV-0171703_57	UniRef90	UniRef90_UPI0018970E8F	phage tail protein	NA
UHGV-0171703_57	eggNOG-mapper	198467.NP92_02910	Tail protein	NA
UHGV-0171703_57	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0171703_57	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0171703_58	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0171703_58	UniRef90	UniRef90_UPI00189A7094	phage tail protein	NA
UHGV-0171703_58	eggNOG-mapper	478749.BRYFOR_07555	Phage tail-collar fibre protein	NA
UHGV-0171703_58	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0171703_58	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171703_58	Structural annotation	PF12571	NA	NA
UHGV-0171703_59	PHROG	phrog_5302	tail protein	tail
UHGV-0171703_59	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-0171703_59	Structural annotation	COG1262	NA	NA
UHGV-0171703_60	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0171703_60	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0171703_60	UniRef90	UniRef90_UPI00189831C2	reverse transcriptase domain-containing protein	NA
UHGV-0171703_60	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0171703_60	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0171703_60	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0171703_60	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0171703_60	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0171703_61	PHROG	phrog_20201	NA	unknown function
UHGV-0171703_62	UniRef90	UniRef90_A0A3D5LSW1	XkdX family protein	NA
UHGV-0171703_62	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0171703_62	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0171703_64	PHROG	phrog_199	holin	lysis
UHGV-0171703_64	UniRef90	UniRef90_UPI00189B5051	phage holin family protein	NA
UHGV-0171703_64	eggNOG-mapper	1121333.JMLH01000047_gene1005	Bacteriophage holin family	NA
UHGV-0171703_64	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171703_64	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171703_64	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171703_65	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0171703_65	PHROG	phrog_2649	endolysin	lysis
UHGV-0171703_65	UniRef90	UniRef90_UPI0018972856	M15 family metallopeptidase	NA
UHGV-0171703_65	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0171703_65	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0171703_65	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0171703_65	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0171703_69	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0171703_69	UniRef90	UniRef90_A0A3D5LSI5	Cro/Cl family transcriptional regulator	NA
UHGV-0171703_69	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0171703_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171703_69	Structural annotation	PF13443, NF000090, COG3655	NA	NA