UHGV-0171708

Genome information

Genome length 39,670 bps

CDS count 54

Completeness 99.33% (high-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171708
vOTU ID	vOTU-010856
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578065
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.79
Jumbo phage	No

Genome content
Genome length	39,670 bps
GC content	28.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.65%
Average CDS length	668.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171708_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0171708_1	PHROG	phrog_6219	endolysin	lysis
UHGV-0171708_1	UniRef90	UniRef90_Q0SPG7	Lysozyme	NA
UHGV-0171708_1	eggNOG-mapper	195103.CPF_0973	family 25	NA
UHGV-0171708_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171708_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0171708_1	Pfam	PF06347	Bacterial SH3 domain	SH3_4
UHGV-0171708_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0171708_1	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0171708_2	PHROG	phrog_9492	NA	unknown function
UHGV-0171708_2	UniRef90	UniRef90_A0A0H2YNK8	Conserved domain protein	NA
UHGV-0171708_2	eggNOG-mapper	195103.CPF_0972	NA	NA
UHGV-0171708_3	PHROG	phrog_199	holin	lysis
UHGV-0171708_3	UniRef90	UniRef90_M9Q253	Putative holin	NA
UHGV-0171708_3	eggNOG-mapper	195103.CPF_0971	Bacteriophage holin family	NA
UHGV-0171708_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171708_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171708_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171708_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171708_4	PHROG	phrog_6130	NA	unknown function
UHGV-0171708_4	eggNOG-mapper	1347392.CCEZ01000005_gene1247	NA	NA
UHGV-0171708_5	PHROG	phrog_16267	NA	unknown function
UHGV-0171708_5	UniRef90	UniRef90_B1RB98	KID repeat family protein	NA
UHGV-0171708_5	eggNOG-mapper	195103.CPF_0969	Phage minor structural protein	NA
UHGV-0171708_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0171708_5	Structural annotation	PF05113, PF04300, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-0171708_6	PHROG	phrog_1401	NA	unknown function
UHGV-0171708_6	UniRef90	UniRef90_UPI00077668B1	NA	NA
UHGV-0171708_6	eggNOG-mapper	195103.CPF_0968	NA	NA
UHGV-0171708_6	Structural annotation	PF07761	NA	NA
UHGV-0171708_7	PHROG	phrog_15246	NA	unknown function
UHGV-0171708_7	eggNOG-mapper	195103.CPF_0967	NA	NA
UHGV-0171708_8	PHROG	phrog_1194	NA	unknown function
UHGV-0171708_8	UniRef90	UniRef90_A0A0L8EWZ8	NA	NA
UHGV-0171708_8	eggNOG-mapper	195103.CPF_0966	NA	NA
UHGV-0171708_8	Pfam	PF20458	NA	DUF6711
UHGV-0171708_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0171708_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171708_9	UniRef90	UniRef90_A0A0H2YR97	Putative membrane protein	NA
UHGV-0171708_9	eggNOG-mapper	195103.CPF_0965	phage tail tape measure protein	NA
UHGV-0171708_9	COG	COG1511	NA	NA
UHGV-0171708_10	PHROG	phrog_8355	NA	unknown function
UHGV-0171708_10	UniRef90	UniRef90_M9Q2I4	Putative phage protein	NA
UHGV-0171708_10	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0171708_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0171708_10	Structural annotation	PF06854	NA	NA
UHGV-0171708_11	PHROG	phrog_8300	NA	unknown function
UHGV-0171708_11	eggNOG-mapper	195103.CPF_0963	NA	NA
UHGV-0171708_11	Structural annotation	PF06896	NA	NA
UHGV-0171708_12	PHROG	phrog_820	major tail protein	tail
UHGV-0171708_12	eggNOG-mapper	195103.CPF_0962	NA	NA
UHGV-0171708_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0171708_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0171708_13	UniRef90	UniRef90_UPI001C8D62C5	minor capsid protein	NA
UHGV-0171708_13	eggNOG-mapper	195103.CPF_0961	NA	NA
UHGV-0171708_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0171708_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0171708_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0171708_14	UniRef90	UniRef90_UPI001C8D6722	minor capsid protein	NA
UHGV-0171708_14	eggNOG-mapper	195103.CPF_0960	NA	NA
UHGV-0171708_15	PHROG	phrog_8710	NA	unknown function
UHGV-0171708_15	eggNOG-mapper	195103.CPF_0959	NA	NA
UHGV-0171708_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0171708_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0171708_16	eggNOG-mapper	1305708.M9Q2K9_9CAUD	NA	NA
UHGV-0171708_17	PHROG	phrog_1378	NA	unknown function
UHGV-0171708_17	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0171708_17	eggNOG-mapper	195103.CPF_0957	NA	NA
UHGV-0171708_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0171708_18	UniRef90	UniRef90_A0A0A7FYK2	Putative phage major capsid protein	NA
UHGV-0171708_18	eggNOG-mapper	1305708.M9Q2F4_9CAUD	NA	NA
UHGV-0171708_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171708_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0171708_19	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0171708_19	eggNOG-mapper	1305708.M9Q248_9CAUD	NA	NA
UHGV-0171708_19	Structural annotation	PF10788	NA	NA
UHGV-0171708_20	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171708_20	UniRef90	UniRef90_A0A844JQP9	NA	NA
UHGV-0171708_20	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0171708_20	Pfam	PF13643	NA	DUF4145
UHGV-0171708_20	Structural annotation	COG2250	NA	NA
UHGV-0171708_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0171708_21	UniRef90	UniRef90_M9Q2F2	Putative phage minor capsid protein	NA
UHGV-0171708_21	eggNOG-mapper	1305708.M9Q2F2_9CAUD	Phage minor capsid protein 2	NA
UHGV-0171708_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0171708_21	Structural annotation	PF06152	NA	NA
UHGV-0171708_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0171708_22	UniRef90	UniRef90_A0A0H2YW57	Putative phage minor capsid protein	NA
UHGV-0171708_22	eggNOG-mapper	195103.CPF_0951	NA	NA
UHGV-0171708_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0171708_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171708_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0171708_23	UniRef90	UniRef90_A0A0H2YW07	Putative phage terminase, large subunit	NA
UHGV-0171708_23	eggNOG-mapper	1305708.M9Q2I1_9CAUD	DNA packaging	NA
UHGV-0171708_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171708_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171708_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0171708_24	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0171708_24	UniRef90	UniRef90_UPI001ABA1F91	terminase small subunit	NA
UHGV-0171708_24	eggNOG-mapper	545697.HMPREF0216_02842	Phage terminase, large subunit, PBSX family	NA
UHGV-0171708_24	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0171708_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0171708_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171708_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0171708_26	PHROG	phrog_3634	NA	unknown function
UHGV-0171708_26	eggNOG-mapper	498211.CJA_0810	phosphatase homologous to the C-terminal domain of histone macroH2A1	NA
UHGV-0171708_26	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0171708_28	eggNOG-mapper	272562.CA_C1910	NA	NA
UHGV-0171708_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171708_29	UniRef90	UniRef90_UPI000EB01A12	NA	NA
UHGV-0171708_29	eggNOG-mapper	195103.CPF_0945	sigma factor activity	NA
UHGV-0171708_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0171708_29	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0171708_30	UniRef90	UniRef90_UPI001C38744D	restriction endonuclease	NA
UHGV-0171708_30	eggNOG-mapper	572479.Hprae_1070	Restriction endonuclease	NA
UHGV-0171708_30	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0171708_30	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0171708_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0171708_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171708_31	UniRef90	UniRef90_UPI0018E40322	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0171708_31	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-0171708_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0171708_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0171708_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0171708_32	eggNOG-mapper	1033737.CAEV01000076_gene540	NA	NA
UHGV-0171708_33	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171708_33	UniRef90	UniRef90_A0A0H2YQP3	Conserved domain protein	NA
UHGV-0171708_33	eggNOG-mapper	195103.CPF_0940	Transcriptional regulator	NA
UHGV-0171708_33	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0171708_33	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0171708_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0171708_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171708_34	UniRef90	UniRef90_A0A0H2YU14	RecT family protein	NA
UHGV-0171708_34	eggNOG-mapper	195103.CPF_0939	RecT family	NA
UHGV-0171708_34	Pfam	PF03837	RecT family	RecT
UHGV-0171708_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0171708_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0171708_34	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0171708_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171708_35	UniRef90	UniRef90_A0A127EGV0	YqaJ domain-containing protein	NA
UHGV-0171708_35	eggNOG-mapper	195103.CPF_0938	YqaJ-like viral recombinase domain	NA
UHGV-0171708_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0171708_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0171708_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0171708_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0171708_36	PHROG	phrog_10625	NA	unknown function
UHGV-0171708_36	Structural annotation	PF14634	NA	NA
UHGV-0171708_39	PHROG	phrog_3292	NA	unknown function
UHGV-0171708_39	UniRef90	UniRef90_A0A6M1WJL1	KTSC domain-containing protein	NA
UHGV-0171708_39	eggNOG-mapper	1051501.AYTL01000027_gene762	KTSC domain	NA
UHGV-0171708_39	Pfam	PF13619	KTSC domain	KTSC
UHGV-0171708_39	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0171708_39	Structural annotation	PF13619	NA	NA
UHGV-0171708_40	UniRef90	UniRef90_A0A6M1WKU7	BC1881 family protein	NA
UHGV-0171708_40	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0171708_41	PHROG	phrog_16446	NA	unknown function
UHGV-0171708_45	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0171708_45	UniRef90	UniRef90_A0A6M1WLT0	ORF6N domain-containing protein	NA
UHGV-0171708_45	eggNOG-mapper	1280689.AUJC01000003_gene927	ORF6N domain	NA
UHGV-0171708_45	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0171708_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0171708_45	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0171708_46	UniRef90	UniRef90_A0A6M1WKA8	Helix-turn-helix transcriptional regulator	NA
UHGV-0171708_46	eggNOG-mapper	1540257.JQMW01000013_gene774	NA	NA
UHGV-0171708_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171708_46	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0171708_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171708_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171708_47	UniRef90	UniRef90_A0A6M1WLJ9	Helix-turn-helix transcriptional regulator	NA
UHGV-0171708_47	eggNOG-mapper	1540257.JQMW01000013_gene775	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171708_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171708_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171708_48	PHROG	phrog_87	metallo-protease	other
UHGV-0171708_48	UniRef90	UniRef90_A0A6M1WL67	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0171708_48	eggNOG-mapper	190478.Q8SBN1_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0171708_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0171708_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0171708_49	PHROG	phrog_31229	NA	unknown function
UHGV-0171708_49	eggNOG-mapper	1230342.CTM_07186	NA	NA
UHGV-0171708_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0171708_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0171708_50	UniRef90	UniRef90_A0A6M1WJL9	Recombinase family protein	NA
UHGV-0171708_50	eggNOG-mapper	195103.CPF_1608	Resolvase, N terminal domain	NA
UHGV-0171708_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0171708_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0171708_50	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0171708_51	KOfam	K03976	ybaK, ebsC; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]	NA
UHGV-0171708_51	PHROG	phrog_17858	NA	unknown function
UHGV-0171708_51	UniRef90	UniRef90_A0A0H2YS73	YbaK/prolyl-tRNA synthetases associated domain protein	NA
UHGV-0171708_51	eggNOG-mapper	195103.CPF_1609	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily	NA
UHGV-0171708_51	Pfam	PF04073	Aminoacyl-tRNA editing domain	tRNA_edit
UHGV-0171708_51	COG	COG2606	Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC	NA
UHGV-0171708_52	UniRef90	UniRef90_A0A0H2YSB1	Putative lipoprotein	NA
UHGV-0171708_54	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0171708_54	UniRef90	UniRef90_A0A2W6N1N9	AAA family ATPase	NA
UHGV-0171708_54	eggNOG-mapper	195103.CPF_1612	NA	NA
UHGV-0171708_54	Pfam	PF13238	AAA domain	AAA_18
UHGV-0171708_54	Structural annotation	PF21448, MF_01111, TIGR01223, COG4088	NA	NA