UHGV-0171716

Genome information

Genome length 52,892 bps

CDS count 86

Completeness 100.00% (complete)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171716
vOTU ID	vOTU-005855
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589204
BioSample	SAMN09781775
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.96
Jumbo phage	No

Genome content
Genome length	52,892 bps
GC content	49.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	84.20%
Average CDS length	522.80 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171716_1	PHROG	phrog_27197	NA	unknown function
UHGV-0171716_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0171716_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171716_1	Structural annotation	NF007410	NA	NA
UHGV-0171716_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171716_4	UniRef90	UniRef90_A0A7X7UVS4	ERF family protein	NA
UHGV-0171716_4	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0171716_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0171716_4	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0171716_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171716_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0171716_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171716_5	Structural annotation	PF05772	NA	NA
UHGV-0171716_6	PHROG	phrog_7566	NA	unknown function
UHGV-0171716_6	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0171716_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171716_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171716_7	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-0171716_7	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0171716_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171716_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171716_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171716_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171716_7	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0171716_8	PHROG	phrog_4973	NA	unknown function
UHGV-0171716_8	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0171716_8	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0171716_8	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0171716_8	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0171716_9	PHROG	phrog_15768	NA	unknown function
UHGV-0171716_9	UniRef90	UniRef90_A0A4R1QQE6	NA	NA
UHGV-0171716_9	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0171716_9	Pfam	PF19808	NA	DUF6291
UHGV-0171716_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171716_9	Structural annotation	PF19808	NA	NA
UHGV-0171716_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0171716_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0171716_10	UniRef90	UniRef90_A0A1Y4J2T6	SF4 helicase domain-containing protein	NA
UHGV-0171716_10	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0171716_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0171716_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0171716_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0171716_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0171716_13	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171716_13	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0171716_13	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0171716_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0171716_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0171716_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0171716_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0171716_14	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0171716_14	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171716_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171716_15	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0171716_15	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0171716_15	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171716_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171716_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171716_24	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0171716_24	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0171716_24	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0171716_24	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0171716_24	Pfam	PF00692	dUTPase	dUTPase
UHGV-0171716_24	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0171716_24	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0171716_24	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0171716_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0171716_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0171716_25	UniRef90	UniRef90_UPI001EFC22B1	site-specific DNA-methyltransferase	NA
UHGV-0171716_25	eggNOG-mapper	1474867.A0A076FIB3_9PHYC	N-methyltransferase activity	NA
UHGV-0171716_25	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0171716_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171716_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0171716_26	Structural annotation	PF16677	NA	NA
UHGV-0171716_27	UniRef90	UniRef90_UPI0012ABADBF	Arc family DNA-binding protein	NA
UHGV-0171716_27	Structural annotation	PF08681	NA	NA
UHGV-0171716_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0171716_33	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0171716_33	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0171716_33	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0171716_33	COG	COG5410	NA	NA
UHGV-0171716_33	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0171716_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171716_34	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0171716_34	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0171716_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171716_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171716_35	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0171716_35	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0171716_35	eggNOG-mapper	1280689.AUJC01000007_gene3319	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0171716_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0171716_35	COG	COG2369	NA	NA
UHGV-0171716_35	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0171716_38	PHROG	phrog_29	major head protein	head and packaging
UHGV-0171716_38	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0171716_38	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0171716_38	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0171716_38	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0171716_40	UniRef90	UniRef90_UPI000F546010	phage head-tail connector protein	NA
UHGV-0171716_40	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0171716_40	Structural annotation	TIGR01560	NA	NA
UHGV-0171716_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171716_43	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0171716_44	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0171716_44	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0171716_45	UniRef90	UniRef90_UPI00041AF7E2	NA	NA
UHGV-0171716_45	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0171716_45	Pfam	PF16478	NA	DUF5055
UHGV-0171716_45	Structural annotation	PF16478	NA	NA
UHGV-0171716_46	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0171716_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171716_47	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0171716_47	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0171716_47	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171716_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0171716_48	PHROG	phrog_1194	NA	unknown function
UHGV-0171716_48	eggNOG-mapper	445972.ANACOL_01864	NA	NA
UHGV-0171716_48	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0171716_49	PHROG	phrog_18190	NA	unknown function
UHGV-0171716_49	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0171716_49	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-0171716_50	PHROG	phrog_18444	NA	unknown function
UHGV-0171716_50	UniRef90	UniRef90_UPI0011788049	peptide chain release factor 2	NA
UHGV-0171716_50	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0171716_52	PHROG	phrog_5302	tail protein	tail
UHGV-0171716_52	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0171716_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171716_54	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0171716_54	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0171716_54	UniRef90	UniRef90_UPI0012B5656A	RNA-directed DNA polymerase	NA
UHGV-0171716_54	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0171716_54	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0171716_54	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0171716_54	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0171716_54	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0171716_55	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0171716_55	UniRef90	UniRef90_UPI0012E0BB7D	phage tail assembly chaperone	NA
UHGV-0171716_55	eggNOG-mapper	561229.Dd1591_4028	Phage tail assembly chaperone protein	NA
UHGV-0171716_55	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0171716_55	Structural annotation	PF16778	NA	NA
UHGV-0171716_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0171716_57	PHROG	phrog_291	endolysin	lysis
UHGV-0171716_57	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0171716_57	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0171716_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171716_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0171716_57	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0171716_58	PHROG	phrog_1863	NA	unknown function
UHGV-0171716_58	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0171716_59	PHROG	phrog_1129	holin	lysis
UHGV-0171716_59	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0171716_59	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0171716_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0171716_59	Structural annotation	PF06946	NA	NA
UHGV-0171716_60	KOfam	K02479	K02479; two-component system, NarL family, response regulator	NA
UHGV-0171716_60	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0171716_60	Structural annotation	PF00196, MF_00674, TIGR02985, COG2771	NA	NA
UHGV-0171716_63	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171716_63	UniRef90	UniRef90_E6MK73	AP2 domain protein	NA
UHGV-0171716_63	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0171716_64	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0171716_64	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0171716_64	Structural annotation	COG4068	NA	NA
UHGV-0171716_65	PHROG	phrog_21718	NA	unknown function
UHGV-0171716_65	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0171716_66	PHROG	phrog_22984	NA	unknown function
UHGV-0171716_67	PHROG	phrog_16490	NA	unknown function
UHGV-0171716_67	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171716_69	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0171716_69	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0171716_71	KOfam	K14059	int; integrase	NA
UHGV-0171716_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0171716_71	UniRef90	UniRef90_UPI0018989279	site-specific integrase	NA
UHGV-0171716_71	eggNOG-mapper	658659.HMPREF0983_02828	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0171716_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171716_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171716_71	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0171716_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171716_72	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171716_75	UniRef90	UniRef90_UPI001966EB25	NA	NA
UHGV-0171716_76	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0171716_76	UniRef90	UniRef90_UPI001BCA36B5	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0171716_76	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0171716_76	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0171716_78	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0171716_78	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171716_78	UniRef90	UniRef90_UPI001C10B06D	HNH endonuclease	NA
UHGV-0171716_78	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0171716_78	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171716_78	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171716_78	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0171716_80	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171716_80	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171716_80	UniRef90	UniRef90_G4KQB4	Putative Xre family DNA-binding protein	NA
UHGV-0171716_80	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0171716_80	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171716_80	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171716_80	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171716_83	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0171716_83	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0171716_86	PHROG	phrog_4433	NA	unknown function
UHGV-0171716_86	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0171716_86	COG	COG5164	Transcription elongation factor SPT5	NA