UHGV-0171732

Genome information

Genome length 38,998 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171732
vOTU ID	vOTU-003119
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587343
BioSample	SAMN09781682
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.7
Jumbo phage	No

Genome content
Genome length	38,998 bps
GC content	55.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.33%
Average CDS length	716.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171732_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0171732_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0171732_4	Structural annotation	PF16509, MF_00674, NF008895, COG2739	NA	NA
UHGV-0171732_5	PHROG	phrog_199	holin	lysis
UHGV-0171732_5	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0171732_5	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0171732_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171732_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171732_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171732_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171732_6	PHROG	phrog_14030	NA	unknown function
UHGV-0171732_6	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0171732_6	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0171732_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0171732_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171732_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0171732_6	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0171732_8	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0171732_8	PHROG	phrog_30034	NA	unknown function
UHGV-0171732_8	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0171732_8	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0171732_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0171732_8	Structural annotation	PF14600	NA	NA
UHGV-0171732_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0171732_9	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0171732_9	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0171732_9	Pfam	PF14359	NA	DUF4406
UHGV-0171732_9	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0171732_12	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-0171732_13	PHROG	phrog_25979	NA	unknown function
UHGV-0171732_13	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0171732_13	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0171732_13	Structural annotation	PF07353, COG3979	NA	NA
UHGV-0171732_15	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0171732_15	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0171732_15	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0171732_16	PHROG	phrog_12105	NA	unknown function
UHGV-0171732_16	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0171732_18	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0171732_18	UniRef90	UniRef90_A0A3C0NPN1	N4-gp56 family major capsid protein	NA
UHGV-0171732_18	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0171732_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0171732_18	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171732_19	PHROG	phrog_13908	NA	unknown function
UHGV-0171732_19	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0171732_19	COG	COG2868	NA	NA
UHGV-0171732_20	PHROG	phrog_22978	NA	unknown function
UHGV-0171732_20	UniRef90	UniRef90_UPI001CF7F562	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0171732_20	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0171732_20	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0171732_20	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0171732_21	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0171732_22	KOfam	K07584	NA	NA
UHGV-0171732_22	PHROG	phrog_4478	peptidase	other
UHGV-0171732_22	UniRef90	UniRef90_A0A2N6APL4	Ribosomal-processing cysteine protease Prp	NA
UHGV-0171732_22	eggNOG-mapper	1114972.AUAW01000001_gene1462	Cysteine protease Prp	NA
UHGV-0171732_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0171732_22	COG	COG2868	NA	NA
UHGV-0171732_22	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0171732_23	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171732_23	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0171732_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171732_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171732_24	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0171732_24	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0171732_24	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0171732_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171732_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171732_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171732_25	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-0171732_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171732_28	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0171732_28	Structural annotation	PF21578	NA	NA
UHGV-0171732_30	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0171732_32	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0171732_32	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0171732_32	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0171732_32	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0171732_33	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-0171732_33	eggNOG-mapper	1589750.A0A0C5AEL6_9CAUD	NA	NA
UHGV-0171732_34	PHROG	phrog_24518	NA	unknown function
UHGV-0171732_34	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0171732_35	PHROG	phrog_824	NA	unknown function
UHGV-0171732_35	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0171732_35	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0171732_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0171732_45	UniRef90	UniRef90_A0A2N2CNE6	NA	NA
UHGV-0171732_45	eggNOG-mapper	742738.HMPREF9460_02806	NA	NA
UHGV-0171732_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171732_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0171732_47	UniRef90	UniRef90_A0A1C6CFH8	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0171732_47	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0171732_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171732_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171732_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171732_48	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0171732_48	PHROG	phrog_9764	NA	unknown function
UHGV-0171732_48	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0171732_48	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0171732_48	PADLOC	AbiQ	AbiQ	Abi
UHGV-0171732_48	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0171732_48	Structural annotation	PF13958	NA	NA
UHGV-0171732_50	KOfam	K14059	int; integrase	NA
UHGV-0171732_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0171732_50	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0171732_50	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0171732_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171732_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171732_50	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA