UHGV-0171767

Genome information

Genome length 36,937 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171767
vOTU ID	vOTU-005859
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587016
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.52
Jumbo phage	No

Genome content
Genome length	36,937 bps
GC content	46.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.12%
Average CDS length	599.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171767_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171767_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171767_1	UniRef90	UniRef90_A0A2N2DD50	Single-stranded DNA-binding protein	NA
UHGV-0171767_1	eggNOG-mapper	1449126.JQKL01000020_gene3366	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0171767_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171767_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171767_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171767_1	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0171767_2	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0171767_2	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0171767_2	UniRef90	UniRef90_UPI001A9A3B1A	site-specific DNA-methyltransferase	NA
UHGV-0171767_2	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0171767_2	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0171767_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0171767_2	COG	COG0863	DNA modification methylase	NA
UHGV-0171767_2	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0171767_3	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171767_3	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0171767_3	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0171767_3	Pfam	PF06356	NA	DUF1064
UHGV-0171767_3	Structural annotation	PF06356	NA	NA
UHGV-0171767_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171767_14	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0171767_14	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-0171767_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0171767_14	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0171767_15	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0171767_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171767_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0171767_16	UniRef90	UniRef90_A0A2V2EQG3	Terminase_3 domain-containing protein	NA
UHGV-0171767_16	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0171767_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171767_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171767_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171767_17	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-0171767_17	PHROG	phrog_16701	peptidase	other
UHGV-0171767_17	UniRef90	UniRef90_A0A352NP54	Pept_C1 domain-containing protein	NA
UHGV-0171767_17	eggNOG-mapper	1449126.JQKL01000005_gene891	Copper amine oxidase N-terminal domain	NA
UHGV-0171767_17	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0171767_17	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0171767_17	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0171767_17	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-0171767_18	PHROG	phrog_1863	NA	unknown function
UHGV-0171767_18	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0171767_19	PHROG	phrog_962	holin	lysis
UHGV-0171767_19	UniRef90	UniRef90_A0A2V2EMI6	Phage holin	NA
UHGV-0171767_19	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0171767_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0171767_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0171767_19	COG	COG5546	NA	NA
UHGV-0171767_19	Structural annotation	COG5546	NA	NA
UHGV-0171767_21	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171767_21	eggNOG-mapper	1408437.JNJN01000002_gene1395	NA	NA
UHGV-0171767_21	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171767_22	PHROG	phrog_3896	NA	unknown function
UHGV-0171767_22	UniRef90	UniRef90_A0A069AU92	Actin aggregate factor	NA
UHGV-0171767_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171767_25	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0171767_25	UniRef90	UniRef90_UPI00174D6DFB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0171767_25	eggNOG-mapper	1321372.AQQB01000018_gene339	BRO family, N-terminal domain	NA
UHGV-0171767_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0171767_25	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171767_25	COG	COG3617	Prophage antirepressor	NA
UHGV-0171767_25	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0171767_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0171767_27	UniRef90	UniRef90_A0A0M2NHR5	Phage major capsid protein	NA
UHGV-0171767_27	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0171767_27	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-0171767_27	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171767_28	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0171767_28	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0171767_28	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0171767_29	Structural annotation	PF11650	NA	NA
UHGV-0171767_30	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0171767_30	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0171767_30	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0171767_32	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0171767_32	PHROG	phrog_819	tail protein	tail
UHGV-0171767_32	UniRef90	UniRef90_UPI001F4CFECE	collagen-like protein	NA
UHGV-0171767_32	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0171767_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0171767_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171767_35	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0171767_35	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0171767_35	UniRef90	UniRef90_A0A2V2EQ01	Peptidase_M23 domain-containing protein	NA
UHGV-0171767_35	eggNOG-mapper	67267.JNXT01000027_gene1316	Peptidase family M23	NA
UHGV-0171767_35	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0171767_35	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0171767_35	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0171767_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0171767_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171767_41	KOfam	K14059	int; integrase	NA
UHGV-0171767_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0171767_41	UniRef90	UniRef90_A0A4Y7QWG8	Site-specific integrase	NA
UHGV-0171767_41	eggNOG-mapper	1243664.CAVL020000019_gene3732	Arm DNA-binding domain	NA
UHGV-0171767_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171767_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171767_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171767_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0171767_42	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0171767_42	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0171767_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171767_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171767_43	UniRef90	UniRef90_A0A413RCW5	XRE family transcriptional regulator	NA
UHGV-0171767_43	eggNOG-mapper	706433.HMPREF9430_01295	NA	NA
UHGV-0171767_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0171767_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171767_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0171767_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171767_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0171767_44	UniRef90	UniRef90_UPI000C7B18EF	helix-turn-helix domain-containing protein	NA
UHGV-0171767_44	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171767_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171767_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171767_46	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171767_46	PHROG	phrog_938	endolysin	lysis
UHGV-0171767_46	UniRef90	UniRef90_R6DPB3	Putative Cell wall hydrolase	NA
UHGV-0171767_46	eggNOG-mapper	1423321.AS29_08695	Cell Wall Hydrolase	NA
UHGV-0171767_46	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0171767_46	COG	COG1388	LysM repeat	NA
UHGV-0171767_46	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0171767_53	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0171767_53	UniRef90	UniRef90_UPI001DF2853F	host-nuclease inhibitor Gam family protein	NA
UHGV-0171767_53	eggNOG-mapper	1415774.U728_772	Bacteriophage Mu Gam like protein	NA
UHGV-0171767_53	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0171767_53	Structural annotation	PF07352	NA	NA
UHGV-0171767_54	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171767_54	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-0171767_54	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0171767_54	Pfam	PF04404	ERF superfamily	ERF
UHGV-0171767_54	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0171767_55	PHROG	phrog_15768	NA	unknown function
UHGV-0171767_55	UniRef90	UniRef90_R6RVQ1	Chromosome segregation ATPases	NA
UHGV-0171767_55	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0171767_55	AcrCatalog	cluster_14472	NA	NA
UHGV-0171767_55	Pfam	PF19808	NA	DUF6291
UHGV-0171767_55	Structural annotation	PF19808	NA	NA
UHGV-0171767_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171767_57	PHROG	phrog_25370	NA	unknown function
UHGV-0171767_57	UniRef90	UniRef90_UPI000C0045E7	single-stranded DNA-binding protein	NA
UHGV-0171767_57	eggNOG-mapper	1461580.CCAS010000097_gene4470	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0171767_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171767_57	COG	COG0629	Single-stranded DNA-binding protein	NA