UHGV-0171806

Genome information

Genome length 43,073 bps

CDS count 63

Completeness 99.38% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171806
vOTU ID	vOTU-010858
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583720
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.19
Jumbo phage	No

Genome content
Genome length	43,073 bps
GC content	50.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.73%
Average CDS length	638.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171806_1	PHROG	phrog_4433	NA	unknown function
UHGV-0171806_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0171806_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0171806_2	PHROG	phrog_16304	NA	unknown function
UHGV-0171806_2	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0171806_2	eggNOG-mapper	1345695.CLSA_c35700	DnaD domain protein	NA
UHGV-0171806_2	Pfam	PF19808	NA	DUF6291
UHGV-0171806_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171806_2	Structural annotation	PF19808	NA	NA
UHGV-0171806_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171806_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171806_3	UniRef90	UniRef90_R6IDK3	Single-stranded DNA-binding protein	NA
UHGV-0171806_3	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0171806_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171806_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171806_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171806_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171806_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0171806_4	PHROG	phrog_7566	NA	unknown function
UHGV-0171806_4	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0171806_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0171806_5	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0171806_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0171806_5	Structural annotation	PF05772	NA	NA
UHGV-0171806_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171806_6	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0171806_6	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0171806_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0171806_6	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0171806_7	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0171806_7	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0171806_7	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0171806_7	Structural annotation	PF05565	NA	NA
UHGV-0171806_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171806_9	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0171806_10	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0171806_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171806_10	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0171806_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171806_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0171806_12	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0171806_12	eggNOG-mapper	1226325.HMPREF1548_02445	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171806_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171806_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171806_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0171806_13	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-0171806_13	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0171806_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171806_16	UniRef90	UniRef90_A0A8D9PDV2	DNA methyl phosphotriester repair domain protein	NA
UHGV-0171806_16	eggNOG-mapper	1392493.JIAB01000001_gene1404	repeat protein	NA
UHGV-0171806_16	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0171806_19	eggNOG-mapper	1382304.JNIL01000001_gene3508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171806_19	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0171806_19	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171806_20	KOfam	K14059	int; integrase	NA
UHGV-0171806_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0171806_20	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-0171806_20	eggNOG-mapper	1384066.JAGT01000001_gene153	Phage integrase family	NA
UHGV-0171806_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171806_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171806_20	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0171806_21	Structural annotation	PF12510	NA	NA
UHGV-0171806_22	PHROG	phrog_20016	NA	unknown function
UHGV-0171806_22	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0171806_22	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0171806_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171806_24	PHROG	phrog_16490	NA	unknown function
UHGV-0171806_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0171806_25	PHROG	phrog_22984	NA	unknown function
UHGV-0171806_26	PHROG	phrog_21718	NA	unknown function
UHGV-0171806_26	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0171806_27	PHROG	phrog_3754	NA	unknown function
UHGV-0171806_27	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0171806_28	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0171806_29	PHROG	phrog_10091	holin	lysis
UHGV-0171806_29	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0171806_29	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0171806_29	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0171806_29	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0171806_29	COG	COG5546	NA	NA
UHGV-0171806_29	Structural annotation	COG5546	NA	NA
UHGV-0171806_30	PHROG	phrog_1863	NA	unknown function
UHGV-0171806_30	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0171806_31	PHROG	phrog_21357	endolysin	lysis
UHGV-0171806_31	UniRef90	UniRef90_UPI001BB47323	CHAP domain-containing protein	NA
UHGV-0171806_31	eggNOG-mapper	693746.OBV_22650	CHAP domain	NA
UHGV-0171806_31	Pfam	PF05257	CHAP domain	CHAP
UHGV-0171806_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0171806_31	Structural annotation	TIGR02594, COG3738	NA	NA
UHGV-0171806_32	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0171806_32	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0171806_34	PHROG	phrog_37900	NA	unknown function
UHGV-0171806_34	UniRef90	UniRef90_UPI00110725F0	NA	NA
UHGV-0171806_34	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0171806_34	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0171806_34	Pfam	PF19789	NA	DUF6273
UHGV-0171806_34	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0171806_34	Structural annotation	PF19190, MF_04116, NF010681, COG3291	NA	NA
UHGV-0171806_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171806_36	PHROG	phrog_22978	NA	unknown function
UHGV-0171806_36	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0171806_37	UniRef90	UniRef90_R6D043	PG_binding_1 domain-containing protein	NA
UHGV-0171806_37	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0171806_38	PHROG	phrog_24267	NA	unknown function
UHGV-0171806_38	UniRef90	UniRef90_A2HGS9	Tail fiber protein, putative	NA
UHGV-0171806_38	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0171806_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0171806_38	Structural annotation	COG4675	NA	NA
UHGV-0171806_39	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0171806_39	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0171806_39	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0171806_40	PHROG	phrog_12105	NA	unknown function
UHGV-0171806_40	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0171806_41	PHROG	phrog_15239	NA	unknown function
UHGV-0171806_42	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0171806_42	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0171806_42	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0171806_42	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0171806_42	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171806_43	PHROG	phrog_13908	NA	unknown function
UHGV-0171806_43	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0171806_44	KOfam	K07584	NA	NA
UHGV-0171806_44	PHROG	phrog_4478	peptidase	other
UHGV-0171806_44	UniRef90	UniRef90_A0A6N9P4C8	Ribosomal-processing cysteine protease Prp	NA
UHGV-0171806_44	eggNOG-mapper	1123009.AUID01000013_gene1737	Cysteine protease Prp	NA
UHGV-0171806_44	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0171806_44	COG	COG2868	NA	NA
UHGV-0171806_44	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0171806_45	PHROG	phrog_156	portal protein	head and packaging
UHGV-0171806_45	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0171806_45	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0171806_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171806_46	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0171806_46	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0171806_46	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0171806_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0171806_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171806_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0171806_47	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-0171806_49	PHROG	phrog_4973	NA	unknown function
UHGV-0171806_49	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0171806_49	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0171806_49	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0171806_50	PHROG	phrog_5781	NA	unknown function
UHGV-0171806_50	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0171806_50	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0171806_50	Pfam	PF14359	NA	DUF4406
UHGV-0171806_50	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0171806_50	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0171806_51	PHROG	phrog_18716	NA	unknown function
UHGV-0171806_51	UniRef90	UniRef90_A0A1J0GJP7	NA	NA
UHGV-0171806_51	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0171806_51	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0171806_51	Structural annotation	PF18909	NA	NA
UHGV-0171806_52	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171806_52	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0171806_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171806_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171806_54	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0171806_55	PHROG	phrog_10714	NA	unknown function
UHGV-0171806_55	Structural annotation	PF15188	NA	NA
UHGV-0171806_59	PHROG	phrog_38832	NA	unknown function
UHGV-0171806_59	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0171806_61	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0171806_61	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0171806_61	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171806_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171806_61	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0171806_62	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171806_62	PHROG	phrog_30550	NA	unknown function
UHGV-0171806_62	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-0171806_62	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0171806_62	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0171806_62	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0171806_63	PHROG	phrog_27197	NA	unknown function
UHGV-0171806_63	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0171806_63	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0171806_63	Structural annotation	NF007410	NA	NA