UHGV-0171880

Genome information

Genome length 32,347 bps

CDS count 38

Completeness 80.22% (medium-quality)

geNomad score 0.9502

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171880
vOTU ID	vOTU-028563
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576836
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9502
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.75
Jumbo phage	No

Genome content
Genome length	32,347 bps
GC content	27.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	83.08%
Average CDS length	708.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171880_1	eggNOG-mapper	748727.CLJU_c16800	NA	NA
UHGV-0171880_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0171880_3	UniRef90	UniRef90_UPI001898F921	helix-turn-helix transcriptional regulator	NA
UHGV-0171880_3	eggNOG-mapper	632245.CLP_2589	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0171880_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171880_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0171880_3	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0171880_6	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-0171880_6	Structural annotation	PF20317, NF041951, COG3655	NA	NA
UHGV-0171880_7	UniRef90	UniRef90_UPI001C10F62C	RNA dependent RNA polymerase	NA
UHGV-0171880_7	eggNOG-mapper	545697.HMPREF0216_01759	NA	NA
UHGV-0171880_7	Pfam	PF05183	RNA dependent RNA polymerase	RdRP
UHGV-0171880_7	Structural annotation	PF05183	NA	NA
UHGV-0171880_8	PHROG	phrog_31546	NA	unknown function
UHGV-0171880_8	Pfam	PF18903	NA	DUF5659
UHGV-0171880_9	UniRef90	UniRef90_UPI000BF790AF	DEAD/DEAH box helicase family protein	NA
UHGV-0171880_9	eggNOG-mapper	1262449.CP6013_1026	NA	NA
UHGV-0171880_11	KOfam	K07063	NA	NA
UHGV-0171880_11	UniRef90	UniRef90_UPI001E4EFE26	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0171880_11	eggNOG-mapper	1267580.AF6_2484	PIN domain	NA
UHGV-0171880_11	Pfam	PF13470	PIN domain	PIN_3
UHGV-0171880_11	NCBIFam	TIGR00305.1	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0171880_11	COG	COG1569	Predicted nucleic acid-binding protein, contains PIN domain	NA
UHGV-0171880_11	Structural annotation	PF13470, MF_00265, TIGR00305, COG1569	NA	NA
UHGV-0171880_16	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0171880_16	UniRef90	UniRef90_A0A1I3PZ25	DNA-packaging protein gp3	NA
UHGV-0171880_16	eggNOG-mapper	536233.CLO_1560	DNA-packaging protein gp3	NA
UHGV-0171880_16	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0171880_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0171880_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0171880_18	UniRef90	UniRef90_UPI00189AA0BC	PBSX family phage terminase large subunit	NA
UHGV-0171880_18	eggNOG-mapper	1499683.CCFF01000005_gene64	Phage terminase, large subunit, PBSX family	NA
UHGV-0171880_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0171880_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0171880_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0171880_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0171880_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171880_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0171880_19	UniRef90	UniRef90_UPI000D9BDE3D	phage portal protein	NA
UHGV-0171880_19	eggNOG-mapper	1415774.U728_1093	portal protein, SPP1 Gp6-like	NA
UHGV-0171880_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0171880_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0171880_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0171880_20	UniRef90	UniRef90_UPI00189AF927	minor capsid protein	NA
UHGV-0171880_20	eggNOG-mapper	1499683.CCFF01000017_gene2145	Phage Mu protein F like protein	NA
UHGV-0171880_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0171880_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0171880_20	COG	COG2369	NA	NA
UHGV-0171880_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0171880_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0171880_21	UniRef90	UniRef90_UPI0018994135	NA	NA
UHGV-0171880_21	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0171880_21	Pfam	PF14265	NA	DUF4355
UHGV-0171880_21	Structural annotation	PF14265	NA	NA
UHGV-0171880_22	PHROG	phrog_267	major head protein	head and packaging
UHGV-0171880_22	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0171880_22	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0171880_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0171880_24	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0171880_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0171880_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171880_25	UniRef90	UniRef90_UPI001898B579	HK97 gp10 family phage protein	NA
UHGV-0171880_25	eggNOG-mapper	357809.Cphy_2961	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171880_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171880_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0171880_26	Structural annotation	PF20765	NA	NA
UHGV-0171880_27	PHROG	phrog_885	major tail protein	tail
UHGV-0171880_27	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0171880_28	PHROG	phrog_1021	NA	unknown function
UHGV-0171880_30	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0171880_30	UniRef90	UniRef90_A0A6A7KA30	Phage tail tape measure protein	NA
UHGV-0171880_30	eggNOG-mapper	573061.Clocel_0792	tail tape measure protein	NA
UHGV-0171880_30	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0171880_30	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0171880_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171880_31	UniRef90	UniRef90_UPI001899F4BE	phage tail family protein	NA
UHGV-0171880_31	eggNOG-mapper	1499683.CCFF01000017_gene2156	tail component	NA
UHGV-0171880_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0171880_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0171880_33	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171880_33	UniRef90	UniRef90_UPI0018978348	phage tail protein	NA
UHGV-0171880_33	eggNOG-mapper	1499683.CCFF01000017_gene2158	Phage minor structural protein	NA
UHGV-0171880_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171880_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171880_33	COG	COG4926	Phage-related protein	NA
UHGV-0171880_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0171880_34	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0171880_34	eggNOG-mapper	1280692.AUJL01000027_gene2142	NA	NA
UHGV-0171880_35	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171880_35	UniRef90	UniRef90_UPI000D8A0ABE	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0171880_35	eggNOG-mapper	1499684.CCNP01000020_gene2264	NA	NA
UHGV-0171880_36	KOfam	K07260	vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0171880_36	UniRef90	UniRef90_A0A1B8RT16	VanY domain-containing protein	NA
UHGV-0171880_36	eggNOG-mapper	1280689.AUJC01000005_gene626	PFAM peptidase M15B and M15C, D,D-carboxypeptidase VanY endolysin	NA
UHGV-0171880_36	Pfam	PF02557	D-alanyl-D-alanine carboxypeptidase	VanY
UHGV-0171880_36	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0171880_37	eggNOG-mapper	1280689.AUJC01000005_gene627	NA	NA