UHGV-0171883

Genome information

Genome length 38,866 bps

CDS count 46

Completeness 97.31% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171883
vOTU ID	vOTU-010862
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576832
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.69
Jumbo phage	No

Genome content
Genome length	38,866 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.41%
Average CDS length	786.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171883_2	KOfam	K14059	int; integrase	NA
UHGV-0171883_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0171883_2	UniRef90	UniRef90_A0A096CR61	Tyr recombinase domain-containing protein	NA
UHGV-0171883_2	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0171883_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0171883_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171883_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171883_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0171883_3	UniRef90	UniRef90_A0A1M6P9T6	zinc_ribbon_2 domain-containing protein	NA
UHGV-0171883_4	PHROG	phrog_1914	NA	unknown function
UHGV-0171883_4	UniRef90	UniRef90_A0A496P8T2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0171883_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0171883_4	COG	COG1592	Rubrerythrin	NA
UHGV-0171883_5	UniRef90	UniRef90_UPI00068C50D9	transcriptional regulator	NA
UHGV-0171883_5	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0171883_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171883_5	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0171883_6	UniRef90	UniRef90_A0A2S7YZG3	DNA-binding protein	NA
UHGV-0171883_6	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0171883_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0171883_7	PHROG	phrog_6058	NA	unknown function
UHGV-0171883_7	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0171883_8	PHROG	phrog_29542	NA	unknown function
UHGV-0171883_9	PHROG	phrog_30876	NA	unknown function
UHGV-0171883_9	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0171883_10	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0171883_11	PHROG	phrog_35266	NA	unknown function
UHGV-0171883_11	UniRef90	UniRef90_D6KLE0	Putative choline binding protein A	NA
UHGV-0171883_12	PHROG	phrog_29844	NA	unknown function
UHGV-0171883_13	PHROG	phrog_16315	NA	unknown function
UHGV-0171883_13	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-0171883_13	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0171883_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0171883_13	Structural annotation	PF14284	NA	NA
UHGV-0171883_14	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0171883_14	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171883_14	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-0171883_14	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0171883_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171883_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0171883_14	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0171883_16	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0171883_16	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0171883_16	UniRef90	UniRef90_UPI000F8DC23A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0171883_16	eggNOG-mapper	883156.HMPREF9282_00923	Phage antirepressor protein	NA
UHGV-0171883_16	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0171883_16	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0171883_16	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0171883_16	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0171883_17	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0171883_17	UniRef90	UniRef90_S4U0C4	RecT protein-like protein	NA
UHGV-0171883_17	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0171883_17	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0171883_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0171883_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0171883_18	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-0171883_18	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0171883_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0171883_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0171883_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0171883_19	PHROG	phrog_29533	NA	unknown function
UHGV-0171883_19	UniRef90	UniRef90_R5BKQ2	Conserved domain protein	NA
UHGV-0171883_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171883_20	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-0171883_20	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0171883_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0171883_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171883_20	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0171883_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0171883_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171883_21	UniRef90	UniRef90_A0A096BYG4	DNA replication protein DnaC	NA
UHGV-0171883_21	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0171883_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0171883_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0171883_21	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0171883_22	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0171883_22	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0171883_22	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0171883_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0171883_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0171883_23	PHROG	phrog_1558	NA	unknown function
UHGV-0171883_23	UniRef90	UniRef90_UPI000BB98A80	sigma-70 region 4 domain-containing protein	NA
UHGV-0171883_23	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0171883_23	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0171883_24	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0171883_24	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0171883_24	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0171883_25	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0171883_25	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0171883_25	UniRef90	UniRef90_A0A2S7YYZ0	Terminase	NA
UHGV-0171883_25	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0171883_25	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0171883_25	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0171883_25	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0171883_25	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0171883_26	PHROG	phrog_20307	NA	unknown function
UHGV-0171883_26	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0171883_26	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0171883_27	PHROG	phrog_21	portal protein	head and packaging
UHGV-0171883_27	UniRef90	UniRef90_A0A2S7YZ05	Phage portal protein	NA
UHGV-0171883_27	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0171883_27	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0171883_27	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0171883_27	COG	COG5511	Phage capsid protein	NA
UHGV-0171883_27	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0171883_28	KOfam	K06904	NA	NA
UHGV-0171883_28	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0171883_28	UniRef90	UniRef90_A0A2S7YZ16	Peptidase	NA
UHGV-0171883_28	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0171883_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0171883_28	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0171883_28	COG	COG3087	Cell division protein FtsN	NA
UHGV-0171883_28	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0171883_29	PHROG	phrog_122	head decoration	head and packaging
UHGV-0171883_29	UniRef90	UniRef90_A0A6L9HL55	NA	NA
UHGV-0171883_29	eggNOG-mapper	572547.Amico_1119	NA	NA
UHGV-0171883_29	Pfam	PF09956	NA	DUF2190
UHGV-0171883_29	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0171883_29	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0171883_30	PHROG	phrog_27032	NA	unknown function
UHGV-0171883_30	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0171883_31	PHROG	phrog_222	tail protein	tail
UHGV-0171883_31	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0171883_31	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0171883_31	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0171883_32	PHROG	phrog_17431	NA	unknown function
UHGV-0171883_32	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0171883_32	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0171883_33	PHROG	phrog_290	minor tail protein	tail
UHGV-0171883_33	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0171883_33	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0171883_33	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0171883_33	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0171883_34	PHROG	phrog_27248	NA	unknown function
UHGV-0171883_35	PHROG	phrog_23549	NA	unknown function
UHGV-0171883_35	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0171883_35	Structural annotation	PF08809	NA	NA
UHGV-0171883_36	PHROG	phrog_22443	NA	unknown function
UHGV-0171883_36	UniRef90	UniRef90_E1LBL5	Putative phage tail tape measure protein, lambda family	NA
UHGV-0171883_36	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0171883_36	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0171883_36	COG	COG4913	NA	NA
UHGV-0171883_36	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0171883_37	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0171883_38	PHROG	phrog_18	minor tail protein	tail
UHGV-0171883_38	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0171883_38	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0171883_38	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0171883_38	COG	COG4672	Phage tail protein	NA
UHGV-0171883_38	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0171883_39	PHROG	phrog_329	minor tail protein	tail
UHGV-0171883_39	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-0171883_39	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0171883_39	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0171883_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0171883_39	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0171883_40	KOfam	K06756	NRCAM; neuronal cell adhesion molecule	NA
UHGV-0171883_40	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0171883_40	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-0171883_40	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0171883_40	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0171883_40	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0171883_40	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0171883_40	COG	COG1511	NA	NA
UHGV-0171883_40	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0171883_41	PHROG	phrog_1084	NA	unknown function
UHGV-0171883_41	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0171883_41	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0171883_42	PHROG	phrog_22483	NA	unknown function
UHGV-0171883_42	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0171883_42	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0171883_42	Structural annotation	PF17936, COG2372	NA	NA
UHGV-0171883_43	PHROG	phrog_199	holin	lysis
UHGV-0171883_43	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-0171883_43	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0171883_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171883_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171883_44	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0171883_44	PHROG	phrog_894	endolysin	lysis
UHGV-0171883_44	UniRef90	UniRef90_E1LBK8	Peptidase M15	NA
UHGV-0171883_44	eggNOG-mapper	696369.KI912183_gene1840	Peptidase M15A	NA
UHGV-0171883_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0171883_44	COG	COG3108	NA	NA
UHGV-0171883_44	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0171883_45	PHROG	phrog_18860	NA	unknown function
UHGV-0171883_46	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0171883_46	UniRef90	UniRef90_A0A2S7YYX0	HTH_59 domain-containing protein	NA
UHGV-0171883_46	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-0171883_46	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0171883_46	Structural annotation	PF20038, TIGR01764, COG3311	NA	NA