UHGV-0171896

Genome information

Genome length 36,439 bps

CDS count 53

Completeness 98.40% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171896
vOTU ID	vOTU-066314
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587135
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.04
Jumbo phage	No

Genome content
Genome length	36,439 bps
GC content	43.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.74%
Average CDS length	634.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171896_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0171896_1	UniRef90	UniRef90_UPI000C75D643	phage terminase small subunit P27 family	NA
UHGV-0171896_1	eggNOG-mapper	536233.CLO_1359	phage terminase small subunit	NA
UHGV-0171896_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171896_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0171896_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0171896_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171896_2	UniRef90	UniRef90_A0A352DNQ0	Terminase	NA
UHGV-0171896_2	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0171896_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171896_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171896_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171896_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0171896_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171896_3	UniRef90	UniRef90_A0A315Y4J8	HK97 family phage portal protein	NA
UHGV-0171896_3	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0171896_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171896_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171896_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171896_4	PHROG	phrog_27009	NA	unknown function
UHGV-0171896_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0171896_5	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0171896_5	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0171896_5	Structural annotation	PF14359	NA	NA
UHGV-0171896_6	KOfam	K06904	NA	NA
UHGV-0171896_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0171896_6	UniRef90	UniRef90_A0A315Y107	HK97 family phage prohead protease	NA
UHGV-0171896_6	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0171896_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0171896_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0171896_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0171896_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171896_7	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0171896_7	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0171896_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171896_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171896_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171896_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171896_8	UniRef90	UniRef90_A0A315Y307	Gp6-like head-tail connector protein	NA
UHGV-0171896_8	eggNOG-mapper	536233.CLO_1364	Phage gp6-like head-tail connector protein	NA
UHGV-0171896_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171896_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171896_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171896_9	UniRef90	UniRef90_A0A315Y1I6	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0171896_9	eggNOG-mapper	1235799.C818_00437	Phage head-tail joining protein	NA
UHGV-0171896_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171896_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171896_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171896_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171896_10	UniRef90	UniRef90_UPI001CFE163F	HK97 gp10 family phage protein	NA
UHGV-0171896_10	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0171896_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171896_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0171896_11	eggNOG-mapper	638301.HMPREF0444_1501	NA	NA
UHGV-0171896_11	Structural annotation	PF20765	NA	NA
UHGV-0171896_12	UniRef90	UniRef90_A0A3D3FES6	S-l_SbsC_C domain-containing protein	NA
UHGV-0171896_12	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0171896_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0171896_13	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0171896_14	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-0171896_14	PHROG	phrog_19074	NA	unknown function
UHGV-0171896_14	UniRef90	UniRef90_A0A352DNT9	Phage tail tape measure protein	NA
UHGV-0171896_14	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0171896_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171896_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171896_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0171896_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0171896_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0171896_15	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0171896_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0171896_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0171896_17	UniRef90	UniRef90_A0A352DNT6	Prophage_tailD1 domain-containing protein	NA
UHGV-0171896_17	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0171896_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171896_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171896_17	COG	COG4926	Phage-related protein	NA
UHGV-0171896_19	PHROG	phrog_199	holin	lysis
UHGV-0171896_19	UniRef90	UniRef90_UPI0002E39164	phage holin family protein	NA
UHGV-0171896_19	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0171896_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171896_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171896_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171896_20	PHROG	phrog_21498	NA	unknown function
UHGV-0171896_20	UniRef90	UniRef90_R6E8L3	ParB-like nuclease	NA
UHGV-0171896_20	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0171896_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0171896_20	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0171896_21	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0171896_21	PHROG	phrog_894	endolysin	lysis
UHGV-0171896_21	UniRef90	UniRef90_R7GQH8	Peptidase M15	NA
UHGV-0171896_21	eggNOG-mapper	641112.ACOK01000068_gene2796	hydrolase, family 25	NA
UHGV-0171896_21	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0171896_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0171896_21	COG	COG3108	NA	NA
UHGV-0171896_21	Structural annotation	PF05951, PF01471, COG3108, COG3409	NA	NA
UHGV-0171896_22	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0171896_23	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0171896_23	PHROG	phrog_25567	NA	unknown function
UHGV-0171896_23	UniRef90	UniRef90_E6UJK8	HTH cro/C1-type domain-containing protein	NA
UHGV-0171896_23	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0171896_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171896_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0171896_23	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0171896_24	COG	COG0474	Magnesium-transporting ATPase (P-type)	NA
UHGV-0171896_25	KOfam	K14059	int; integrase	NA
UHGV-0171896_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0171896_25	UniRef90	UniRef90_A0A352DNS6	Site-specific integrase	NA
UHGV-0171896_25	eggNOG-mapper	641112.ACOK01000103_gene518	Phage integrase family	NA
UHGV-0171896_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0171896_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171896_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171896_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0171896_26	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0171896_26	eggNOG-mapper	502558.EGYY_13540	Host cell surface-exposed lipoprotein	NA
UHGV-0171896_26	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0171896_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0171896_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0171896_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0171896_27	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0171896_27	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0171896_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171896_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0171896_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0171896_27	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0171896_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0171896_33	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0171896_33	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0171896_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0171896_33	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0171896_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0171896_34	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0171896_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0171896_34	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0171896_35	PHROG	phrog_21613	NA	unknown function
UHGV-0171896_35	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0171896_36	PHROG	phrog_1499	NA	unknown function
UHGV-0171896_36	UniRef90	UniRef90_A0A315Y1S7	Exonuclease SbcC	NA
UHGV-0171896_36	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0171896_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-0171896_36	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0171896_36	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0171896_37	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171896_37	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-0171896_37	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0171896_37	Pfam	PF12684	NA	DUF3799
UHGV-0171896_37	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0171896_37	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0171896_38	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0171896_38	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0171896_38	eggNOG-mapper	373903.Hore_03490	ERCC4 domain	NA
UHGV-0171896_38	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0171896_38	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0171896_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0171896_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0171896_39	UniRef90	UniRef90_A0A1M7JQ86	Single-stranded DNA-binding protein	NA
UHGV-0171896_39	eggNOG-mapper	1384066.JAGT01000001_gene1404	Single-stranded DNA-binding protein	NA
UHGV-0171896_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0171896_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0171896_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0171896_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0171896_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0171896_40	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0171896_40	UniRef90	UniRef90_UPI00085BD5C4	NA	NA
UHGV-0171896_40	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0171896_40	Pfam	PF19808	NA	DUF6291
UHGV-0171896_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171896_40	Structural annotation	PF19808	NA	NA
UHGV-0171896_41	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0171896_41	UniRef90	UniRef90_A0A5P0ZU60	Replication terminator protein	NA
UHGV-0171896_41	eggNOG-mapper	756499.Desde_1051	NA	NA
UHGV-0171896_42	PHROG	phrog_1029	NA	unknown function
UHGV-0171896_42	eggNOG-mapper	349161.Dred_1186	NA	NA
UHGV-0171896_42	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0171896_45	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0171896_45	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0171896_45	Structural annotation	PF01503, MF_01019, NF001613, COG0140	NA	NA
UHGV-0171896_47	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0171896_47	UniRef90	UniRef90_A0A1C6FEN0	Restriction alleviation protein, Lar family	NA
UHGV-0171896_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0171896_47	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0171896_47	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0171896_50	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0171896_50	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0171896_50	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-0171896_50	eggNOG-mapper	1462527.CCDM010000006_gene4447	Belongs to the MT-A70-like family	NA
UHGV-0171896_50	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0171896_50	Pfam	PF05063	MT-A70	MT-A70
UHGV-0171896_50	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0171896_50	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0171896_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171896_52	UniRef90	UniRef90_UPI0005D1DECF	NA	NA
UHGV-0171896_52	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0171896_52	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0171896_52	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA