UHGV-0171911

Genome information

Genome length 17,539 bps

CDS count 21

Completeness 90.54% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171911
vOTU ID	vOTU-067402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586967
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length	17,539 bps
GC content	42.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	88.93%
Average CDS length	744.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171911_2	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0171911_2	PHROG	phrog_7043	tail protein	tail
UHGV-0171911_2	eggNOG-mapper	1408422.JHYF01000002_gene2409	domain protein	NA
UHGV-0171911_2	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0171911_2	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0171911_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0171911_3	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0171911_3	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0171911_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0171911_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0171911_4	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0171911_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0171911_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0171911_5	PHROG	phrog_2248	tail protein	tail
UHGV-0171911_5	UniRef90	UniRef90_A0A843GXV1	Caud_tail_N domain-containing protein	NA
UHGV-0171911_5	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0171911_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0171911_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0171911_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0171911_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0171911_7	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0171911_7	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0171911_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0171911_9	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0171911_9	eggNOG-mapper	562982.HMPREF0432_00075	heme binding	NA
UHGV-0171911_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0171911_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0171911_9	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0171911_9	Structural annotation	PF18013	NA	NA
UHGV-0171911_10	PHROG	phrog_14030	NA	unknown function
UHGV-0171911_10	UniRef90	UniRef90_UPI000BE22344	peptidoglycan-binding protein	NA
UHGV-0171911_10	eggNOG-mapper	1195236.CTER_2407	NlpC/P60 family	NA
UHGV-0171911_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0171911_10	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0171911_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0171911_10	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0171911_11	PHROG	phrog_4898	holin	lysis
UHGV-0171911_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0171911_12	UniRef90	UniRef90_A0A843HIN8	Phage DNA encapsidation protein	NA
UHGV-0171911_12	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0171911_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0171911_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0171911_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0171911_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171911_15	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0171911_15	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0171911_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0171911_15	Structural annotation	PF03175, MF_04055, NF004422, COG0417	NA	NA
UHGV-0171911_17	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0171911_17	Structural annotation	PF17427	NA	NA
UHGV-0171911_18	Structural annotation	PF17548	NA	NA
UHGV-0171911_20	Structural annotation	PF14120	NA	NA