UHGV-0171916

Genome information

Genome length 35,181 bps

CDS count 57

Completeness 99.66% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171916
vOTU ID	vOTU-010863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587136
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.74
Jumbo phage	No

Genome content
Genome length	35,181 bps
GC content	61.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.09%
Average CDS length	578.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171916_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0171916_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171916_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0171916_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171916_2	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0171916_2	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0171916_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171916_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171916_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171916_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0171916_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171916_4	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0171916_4	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0171916_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171916_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171916_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171916_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171916_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0171916_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0171916_5	UniRef90	UniRef90_A0A3D4EJM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0171916_5	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0171916_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0171916_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0171916_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0171916_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171916_6	UniRef90	UniRef90_A0A3D4EJL4	Phage major capsid protein	NA
UHGV-0171916_6	eggNOG-mapper	411902.CLOBOL_03879	Phage capsid family	NA
UHGV-0171916_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171916_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171916_6	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171916_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0171916_7	UniRef90	UniRef90_UPI000F63D7A0	head-tail connector protein	NA
UHGV-0171916_7	eggNOG-mapper	1348908.KI518589_gene2534	Phage gp6-like head-tail connector protein	NA
UHGV-0171916_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171916_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171916_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0171916_8	UniRef90	UniRef90_A0A3D4EHM1	Head-tail adaptor protein	NA
UHGV-0171916_8	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0171916_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171916_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171916_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171916_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171916_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171916_9	UniRef90	UniRef90_A0A1C6JN94	Phage protein, HK97 gp10 family	NA
UHGV-0171916_9	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171916_10	Structural annotation	PF12691	NA	NA
UHGV-0171916_11	PHROG	phrog_158	major tail protein	tail
UHGV-0171916_11	UniRef90	UniRef90_A0A831TIM5	Histidine kinase	NA
UHGV-0171916_11	eggNOG-mapper	1414720.CBYM010000002_gene566	Phage tail tube protein	NA
UHGV-0171916_11	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0171916_11	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0171916_12	PHROG	phrog_34587	NA	unknown function
UHGV-0171916_12	eggNOG-mapper	324057.Pjdr2_1550	NA	NA
UHGV-0171916_12	Structural annotation	PF11836	NA	NA
UHGV-0171916_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0171916_14	UniRef90	UniRef90_A0A1G9R278	Phage-related protein	NA
UHGV-0171916_14	eggNOG-mapper	1120998.AUFC01000013_gene2948	Phage tail tape measure protein TP901	NA
UHGV-0171916_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0171916_15	PHROG	phrog_1194	NA	unknown function
UHGV-0171916_15	eggNOG-mapper	1122918.KB907248_gene4488	NA	NA
UHGV-0171916_15	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0171916_16	PHROG	phrog_6616	tail protein	tail
UHGV-0171916_16	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0171916_16	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0171916_17	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0171916_17	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0171916_18	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0171916_18	Structural annotation	PF07238	NA	NA
UHGV-0171916_20	PHROG	phrog_38044	NA	unknown function
UHGV-0171916_20	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0171916_20	Structural annotation	PF19079	NA	NA
UHGV-0171916_21	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0171916_22	PHROG	phrog_18593	NA	unknown function
UHGV-0171916_22	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0171916_22	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0171916_22	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0171916_22	Structural annotation	PF14600	NA	NA
UHGV-0171916_23	PHROG	phrog_4105	NA	unknown function
UHGV-0171916_23	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0171916_23	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0171916_24	PHROG	phrog_881	holin	lysis
UHGV-0171916_24	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0171916_24	eggNOG-mapper	1229517.AMFD01000023_gene1299	Putative phage holin Dp-1	NA
UHGV-0171916_24	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0171916_24	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0171916_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0171916_25	PHROG	phrog_435	endolysin	lysis
UHGV-0171916_25	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0171916_25	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0171916_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0171916_25	Pfam	PF05036	SPOR domain	SPOR
UHGV-0171916_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0171916_25	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0171916_26	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0171916_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0171916_31	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0171916_32	KOfam	K14059	int; integrase	NA
UHGV-0171916_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0171916_32	UniRef90	UniRef90_A0A174HFN7	Site-specific tyrosine recombinase XerC	NA
UHGV-0171916_32	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0171916_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171916_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171916_32	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0171916_33	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0171916_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171916_33	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0171916_34	PHROG	phrog_2546	NA	unknown function
UHGV-0171916_34	UniRef90	UniRef90_A0A2A5T8R0	DZANK-type domain-containing protein	NA
UHGV-0171916_34	eggNOG-mapper	1160721.RBI_II00529	PFAM Tellurite resistance protein TerB	NA
UHGV-0171916_34	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0171916_34	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0171916_34	Structural annotation	PF10571, TIGR04165, COG3478	NA	NA
UHGV-0171916_35	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0171916_35	PHROG	phrog_3989	NA	unknown function
UHGV-0171916_35	UniRef90	UniRef90_UPI0003170388	BRCT domain-containing protein	NA
UHGV-0171916_35	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0171916_35	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0171916_35	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0171916_35	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0171916_36	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0171916_36	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0171916_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171916_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0171916_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171916_37	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0171916_37	UniRef90	UniRef90_A0A352DNS0	XRE family transcriptional regulator	NA
UHGV-0171916_37	eggNOG-mapper	521393.JH806632_gene1096	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171916_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171916_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0171916_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0171916_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0171916_40	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0171916_40	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171916_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171916_40	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0171916_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0171916_41	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0171916_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171916_44	UniRef90	UniRef90_UPI00195D2180	helix-turn-helix domain-containing protein	NA
UHGV-0171916_44	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0171916_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0171916_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0171916_44	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0171916_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0171916_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0171916_45	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0171916_45	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0171916_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0171916_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0171916_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-0171916_45	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0171916_46	Structural annotation	COG2139	NA	NA
UHGV-0171916_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0171916_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0171916_47	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0171916_47	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0171916_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-0171916_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0171916_47	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0171916_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0171916_49	PHROG	phrog_27290	NA	unknown function
UHGV-0171916_49	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0171916_49	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0171916_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0171916_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0171916_49	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0171916_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0171916_55	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0171916_55	Structural annotation	PF01446	NA	NA
UHGV-0171916_56	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0171916_56	Structural annotation	PF14205	NA	NA
UHGV-0171916_57	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171916_57	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-0171916_57	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0171916_57	AcrCatalog	cluster_19695	NA	NA
UHGV-0171916_57	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171916_57	Structural annotation	PF05766	NA	NA