UHGV-0171954

Genome information

Genome length 42,354 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0171954
vOTU ID	vOTU-046428
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578897
BioSample	SAMN07501135
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.62
Jumbo phage	No

Genome content
Genome length	42,354 bps
GC content	35.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.28%
Average CDS length	752.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0171954_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0171954_1	UniRef90	UniRef90_A0A1I2DTC2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0171954_1	eggNOG-mapper	887929.HMP0721_1258	Phage tail tape measure protein, TP901 family	NA
UHGV-0171954_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0171954_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0171954_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0171954_2	UniRef90	UniRef90_S4IF53	Phage tail component protein	NA
UHGV-0171954_2	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0171954_2	Structural annotation	PF19266, PF11699, TIGR01633, COG4722	NA	NA
UHGV-0171954_3	PHROG	phrog_9886	NA	unknown function
UHGV-0171954_3	UniRef90	UniRef90_UPI00068EE169	phage tail protein	NA
UHGV-0171954_3	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0171954_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0171954_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0171954_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0171954_3	COG	COG4926	Phage-related protein	NA
UHGV-0171954_3	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0171954_4	PHROG	phrog_34633	NA	unknown function
UHGV-0171954_4	UniRef90	UniRef90_R5JH80	NA	NA
UHGV-0171954_4	eggNOG-mapper	1499683.CCFF01000017_gene2562	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0171954_4	Structural annotation	PF14545, PF18463, NF010435, COG5513	NA	NA
UHGV-0171954_5	PHROG	phrog_8309	NA	unknown function
UHGV-0171954_5	eggNOG-mapper	596315.HMPREF0634_0229	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0171954_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0171954_5	Structural annotation	PF17900	NA	NA
UHGV-0171954_6	PHROG	phrog_33623	NA	unknown function
UHGV-0171954_8	PHROG	phrog_199	holin	lysis
UHGV-0171954_8	UniRef90	UniRef90_A0A1I2DTP4	Toxin secretion/phage lysis holin	NA
UHGV-0171954_8	eggNOG-mapper	596315.HMPREF0634_0232	Toxin secretion phage lysis holin	NA
UHGV-0171954_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0171954_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0171954_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0171954_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0171954_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0171954_9	PHROG	phrog_6745	endolysin	lysis
UHGV-0171954_9	UniRef90	UniRef90_E0E215	Glycosyl hydrolase family 25	NA
UHGV-0171954_9	eggNOG-mapper	596315.HMPREF0634_0233	Glycosyl hydrolases family 25	NA
UHGV-0171954_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0171954_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0171954_9	COG	COG1388	LysM repeat	NA
UHGV-0171954_10	PHROG	phrog_2277	NA	unknown function
UHGV-0171954_10	eggNOG-mapper	1035196.HMPREF9998_01587	NA	NA
UHGV-0171954_11	KOfam	K14059	int; integrase	NA
UHGV-0171954_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0171954_11	UniRef90	UniRef90_A0A135YZ76	Site-specific recombinase, phage integrase family	NA
UHGV-0171954_11	eggNOG-mapper	1219626.HMPREF1639_07245	Phage integrase family	NA
UHGV-0171954_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0171954_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0171954_11	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0171954_12	UniRef90	UniRef90_A0A1I2DW82	Cro/C1-type HTH DNA-binding domain-containing protein	NA
UHGV-0171954_12	eggNOG-mapper	1567014.A0A0A7RTU8_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0171954_12	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0171954_13	KOfam	K01174	nuc; micrococcal nuclease [EC:3.1.31.1]	NA
UHGV-0171954_13	PHROG	phrog_20876	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0171954_13	UniRef90	UniRef90_UPI00068BF477	thermonuclease family protein	NA
UHGV-0171954_13	eggNOG-mapper	596315.HMPREF0634_0903	Staphylococcal nuclease homologues	NA
UHGV-0171954_13	PADLOC	shah_acc_0212	SNc+LTD	CRISPR-CAS
UHGV-0171954_13	Pfam	PF00565	Staphylococcal nuclease homologue	SNase
UHGV-0171954_13	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0171954_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0171954_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0171954_14	UniRef90	UniRef90_A0A135YZA3	DNA-binding helix-turn-helix protein	NA
UHGV-0171954_14	eggNOG-mapper	596329.HMPREF0631_1344	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0171954_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0171954_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0171954_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0171954_14	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0171954_15	UniRef90	UniRef90_A0A833CC75	Helix-turn-helix transcriptional regulator	NA
UHGV-0171954_15	eggNOG-mapper	387344.LVIS_1596	Helix-turn-helix XRE-family like proteins	NA
UHGV-0171954_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0171954_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0171954_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0171954_20	UniRef90	UniRef90_A0A1I2DVF7	Helicase conserved C-terminal domain-containing protein	NA
UHGV-0171954_20	eggNOG-mapper	1219626.HMPREF1639_07295	SNF2 family N-terminal domain	NA
UHGV-0171954_20	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0171954_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0171954_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0171954_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0171954_20	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0171954_21	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0171954_21	UniRef90	UniRef90_A0A1I2DVD4	ERF superfamily protein	NA
UHGV-0171954_21	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0171954_21	Pfam	PF04404	ERF superfamily	ERF
UHGV-0171954_21	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0171954_21	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0171954_23	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171954_23	UniRef90	UniRef90_A0A1I2DVG7	Phage-related protein, predicted endonuclease	NA
UHGV-0171954_23	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0171954_23	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0171954_23	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0171954_23	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0171954_26	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0171954_27	UniRef90	UniRef90_UPI001570F699	VRR-NUC domain-containing protein	NA
UHGV-0171954_27	eggNOG-mapper	203119.Cthe_1738	VRR_NUC	NA
UHGV-0171954_27	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0171954_27	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0171954_28	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0171954_28	UniRef90	UniRef90_A0A1I2DVB1	HDIG domain-containing protein	NA
UHGV-0171954_28	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0171954_28	Pfam	PF01966	HD domain	HD
UHGV-0171954_28	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0171954_28	Structural annotation	PF01966, TIGR03760, COG1418	NA	NA
UHGV-0171954_29	PHROG	phrog_6568	NA	unknown function
UHGV-0171954_29	eggNOG-mapper	411460.RUMTOR_01363	NA	NA
UHGV-0171954_30	PHROG	phrog_236	nucleotide kinase	other
UHGV-0171954_30	UniRef90	UniRef90_A0A7X2P7B7	NA	NA
UHGV-0171954_30	eggNOG-mapper	1219626.HMPREF1639_07355	NA	NA
UHGV-0171954_30	Pfam	PF11753	NA	DUF3310
UHGV-0171954_31	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0171954_31	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0171954_31	UniRef90	UniRef90_A0A1I2DVR1	Putative DNA primase/helicase	NA
UHGV-0171954_31	eggNOG-mapper	1219626.HMPREF1639_07360	D5 N terminal like	NA
UHGV-0171954_31	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0171954_31	Pfam	PF19263	NA	DUF5906
UHGV-0171954_31	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0171954_31	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0171954_31	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0171954_33	PHROG	phrog_1817	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0171954_33	UniRef90	UniRef90_A0A1I2DUU9	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0171954_33	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0171954_33	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0171954_34	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0171954_34	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0171954_34	UniRef90	UniRef90_A0A1I2DVP7	Ribonucleoside-triphosphate reductase class III catalytic subunit	NA
UHGV-0171954_34	eggNOG-mapper	1219626.HMPREF1639_07380	Ribonucleoside-triphosphate reductase	NA
UHGV-0171954_34	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0171954_34	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0171954_34	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0171954_34	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0171954_34	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0171954_35	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0171954_35	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0171954_35	UniRef90	UniRef90_A0A1I2DUU1	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-0171954_35	eggNOG-mapper	1219626.HMPREF1639_07390	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0171954_35	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0171954_35	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0171954_35	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0171954_35	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0171954_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0171954_36	UniRef90	UniRef90_UPI0015A57B2C	NA	NA
UHGV-0171954_36	eggNOG-mapper	1423775.BAMN01000011_gene611	NA	NA
UHGV-0171954_37	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0171954_37	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171954_37	UniRef90	UniRef90_A0A1I2DVJ4	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171954_37	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0171954_37	PADLOC	ZorE2_00001	HNH endonuclease	Zorya
UHGV-0171954_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0171954_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0171954_37	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0171954_38	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0171954_38	UniRef90	UniRef90_A0A1I2DWB1	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0171954_38	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0171954_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0171954_38	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0171954_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0171954_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0171954_39	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-0171954_39	UniRef90	UniRef90_UPI001E3C5613	terminase large subunit	NA
UHGV-0171954_39	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0171954_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171954_40	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0171954_40	UniRef90	UniRef90_UPI001952E2BA	GIY-YIG nuclease family protein	NA
UHGV-0171954_40	eggNOG-mapper	1589270.A0A0B5A5V6_9CAUD	endonuclease activity	NA
UHGV-0171954_40	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0171954_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0171954_41	UniRef90	UniRef90_A0A1I2DW94	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171954_41	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0171954_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0171954_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0171954_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0171954_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0171954_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0171954_42	UniRef90	UniRef90_A0A1I2DUZ3	Phage portal protein, HK97 family	NA
UHGV-0171954_42	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0171954_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0171954_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0171954_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0171954_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0171954_43	PHROG	phrog_16951	NA	unknown function
UHGV-0171954_43	eggNOG-mapper	411473.RUMCAL_01235	NA	NA
UHGV-0171954_43	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0171954_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0171954_44	UniRef90	UniRef90_A0A1I2DUU2	Phage major capsid protein, HK97 family	NA
UHGV-0171954_44	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0171954_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0171954_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0171954_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0171954_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0171954_45	UniRef90	UniRef90_UPI001570E06D	head-tail connector protein	NA
UHGV-0171954_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0171954_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0171954_46	UniRef90	UniRef90_A0A1I2DTU2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0171954_46	eggNOG-mapper	1235793.C809_04325	Phage head-tail joining protein	NA
UHGV-0171954_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0171954_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0171954_46	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0171954_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0171954_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0171954_47	UniRef90	UniRef90_A0A1I2DTS6	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0171954_47	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0171954_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0171954_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0171954_48	UniRef90	UniRef90_R5X6A1	Putative prophage pi2 protein 38	NA
UHGV-0171954_48	Structural annotation	PF05657	NA	NA
UHGV-0171954_49	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0171954_49	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0171954_49	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0171954_50	eggNOG-mapper	411902.CLOBOL_03873	NA	NA
UHGV-0171954_50	Structural annotation	PF17388	NA	NA
UHGV-0171954_51	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0171954_51	UniRef90	UniRef90_A0A352NZS1	Phage tail tape measure protein (Fragment)	NA
UHGV-0171954_51	eggNOG-mapper	1415774.U728_1244	tail tape measure protein	NA
UHGV-0171954_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0171954_51	Structural annotation	PF16535	NA	NA