UHGV-0172045

Genome information

vOTU vOTU-019722

Genome length 42,727 bps

CDS count 50

Completeness 53.88% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172045
vOTU ID	vOTU-019722
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589457
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.62
Jumbo phage	No

Genome content
Genome length	42,727 bps
GC content	37.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	87.93%
Average CDS length	752.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172045_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172045_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172045_1	UniRef90	UniRef90_A0A1Q6KAD1	HTH cro/C1-type domain-containing protein	NA
UHGV-0172045_1	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0172045_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172045_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172045_1	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0172045_4	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0172045_4	PHROG	phrog_8810	NA	unknown function
UHGV-0172045_4	UniRef90	UniRef90_A0A373NRE0	Stage 0 sporulation protein A homolog	NA
UHGV-0172045_4	eggNOG-mapper	742740.HMPREF9474_03223	LytTr DNA-binding domain	NA
UHGV-0172045_4	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0172045_4	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0172045_4	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0172045_4	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0172045_5	PHROG	phrog_6745	endolysin	lysis
UHGV-0172045_5	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0172045_5	eggNOG-mapper	476272.RUMHYD_01851	Putative peptidoglycan binding domain	NA
UHGV-0172045_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0172045_5	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0172045_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0172045_5	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0172045_8	PHROG	phrog_18444	NA	unknown function
UHGV-0172045_8	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0172045_9	PHROG	phrog_6616	tail protein	tail
UHGV-0172045_9	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0172045_9	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0172045_9	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0172045_10	PHROG	phrog_1194	NA	unknown function
UHGV-0172045_10	eggNOG-mapper	1117108.PAALTS15_13512	NA	NA
UHGV-0172045_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172045_11	KOfam	K03100	lepB; signal peptidase I [EC:3.4.21.89]	NA
UHGV-0172045_11	UniRef90	UniRef90_A0A373NQX5	Signal peptidase I	NA
UHGV-0172045_11	eggNOG-mapper	411460.RUMTOR_02312	NA	NA
UHGV-0172045_11	Pfam	PF10502	Signal peptidase, peptidase S26	Peptidase_S26
UHGV-0172045_11	NCBIFam	TIGR02227.1	signal peptidase I	NA
UHGV-0172045_11	COG	COG0681	Signal peptidase I	NA
UHGV-0172045_11	Structural annotation	PF10502, TIGR02227, COG4959	NA	NA
UHGV-0172045_12	eggNOG-mapper	1235793.C809_00537	NA	NA
UHGV-0172045_13	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0172045_14	eggNOG-mapper	1304866.K413DRAFT_3400	NA	NA
UHGV-0172045_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0172045_15	PHROG	phrog_16986	NA	unknown function
UHGV-0172045_15	UniRef90	UniRef90_A0A843HQJ6	HNH endonuclease	NA
UHGV-0172045_15	eggNOG-mapper	411490.ANACAC_00801	endonuclease activity	NA
UHGV-0172045_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172045_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172045_16	PHROG	phrog_28918	NA	unknown function
UHGV-0172045_16	UniRef90	UniRef90_A0A0F0C7Q9	Chromosome partition protein Smc	NA
UHGV-0172045_16	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0172045_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172045_17	KOfam	K07496	K07496; putative transposase	NA
UHGV-0172045_17	PHROG	phrog_506	transposase	integration and excision
UHGV-0172045_17	UniRef90	UniRef90_R7IV04	Transposase IS605 OrfB family central region	NA
UHGV-0172045_17	eggNOG-mapper	633697.EubceDRAFT1_2043	Transposase, IS605 OrfB family	NA
UHGV-0172045_17	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-0172045_17	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0172045_17	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0172045_17	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0172045_17	COG	COG0675	Transposase	NA
UHGV-0172045_17	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0172045_20	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0172045_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0172045_21	PHROG	phrog_443	holin	lysis
UHGV-0172045_21	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0172045_21	eggNOG-mapper	397287.C807_03698	Putative lactococcus lactis phage r1t holin	NA
UHGV-0172045_21	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0172045_21	Structural annotation	PF16945	NA	NA
UHGV-0172045_22	Structural annotation	PF05657	NA	NA
UHGV-0172045_23	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0172045_23	AcrCatalog	cluster_24841	NA	NA
UHGV-0172045_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172045_25	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0172045_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0172045_26	PHROG	phrog_1233	NA	unknown function
UHGV-0172045_26	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0172045_27	PHROG	phrog_1233	NA	unknown function
UHGV-0172045_27	eggNOG-mapper	1151292.QEW_4538	NA	NA
UHGV-0172045_29	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0172045_30	PHROG	phrog_16490	NA	unknown function
UHGV-0172045_30	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0172045_32	PHROG	phrog_21718	NA	unknown function
UHGV-0172045_32	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0172045_33	UniRef90	UniRef90_A0A373NQ83	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0172045_33	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0172045_33	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0172045_34	PHROG	phrog_937	hemolysin	other
UHGV-0172045_35	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0172045_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0172045_36	UniRef90	UniRef90_A0A352P898	S-l_SbsC_C domain-containing protein	NA
UHGV-0172045_36	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0172045_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0172045_36	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0172045_37	PHROG	phrog_909	major head protein	head and packaging
UHGV-0172045_37	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0172045_37	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0172045_37	Structural annotation	PF02924	NA	NA
UHGV-0172045_38	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0172045_38	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0172045_39	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0172045_39	UniRef90	UniRef90_K1V7A5	Phage Mu protein F like protein	NA
UHGV-0172045_39	eggNOG-mapper	1052684.PPM_2647	phage Mu protein	NA
UHGV-0172045_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172045_39	COG	COG2369	NA	NA
UHGV-0172045_39	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0172045_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172045_40	UniRef90	UniRef90_A0A373NRD8	Phage portal protein	NA
UHGV-0172045_40	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172045_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172045_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172045_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172045_41	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0172045_41	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0172045_41	Pfam	PF07374	NA	DUF1492
UHGV-0172045_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172045_41	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0172045_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172045_42	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0172045_42	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0172045_42	COG	COG5410	NA	NA
UHGV-0172045_42	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0172045_43	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0172045_43	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0172045_43	UniRef90	UniRef90_UPI001898CD6A	RtcB family protein	NA
UHGV-0172045_43	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0172045_43	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0172045_43	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0172045_43	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0172045_44	KOfam	K07496	K07496; putative transposase	NA
UHGV-0172045_44	PHROG	phrog_506	transposase	integration and excision
UHGV-0172045_44	UniRef90	UniRef90_A0A6L8TA70	IS200/IS605 family element transposase accessory protein TnpB	NA
UHGV-0172045_44	eggNOG-mapper	411459.RUMOBE_01965	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0172045_44	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0172045_44	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0172045_44	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0172045_44	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0172045_44	COG	COG0675	Transposase	NA
UHGV-0172045_44	Structural annotation	PF01385, MF_00034, NF038281, COG0675	NA	NA
UHGV-0172045_46	PHROG	phrog_14301	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0172045_46	UniRef90	UniRef90_UPI001ADCC41E	NA	NA
UHGV-0172045_46	eggNOG-mapper	1429046.RR21198_4862	NA	NA
UHGV-0172045_46	Pfam	PF17720	NA	DUF5565
UHGV-0172045_46	Structural annotation	PF17720	NA	NA