UHGV-0172048

Genome information

Genome length 36,692 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172048
vOTU ID	vOTU-004727
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589454
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.31
Jumbo phage	No

Genome content
Genome length	36,692 bps
GC content	42.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.33%
Average CDS length	620.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172048_1	COG	COG1388	LysM repeat	NA
UHGV-0172048_2	PHROG	phrog_13404	holin	lysis
UHGV-0172048_2	UniRef90	UniRef90_UPI001C035834	phage holin	NA
UHGV-0172048_2	eggNOG-mapper	585506.HMPREF0877_0849	COG5546 Small integral membrane protein	NA
UHGV-0172048_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0172048_2	COG	COG5546	NA	NA
UHGV-0172048_3	PHROG	phrog_1009	NA	unknown function
UHGV-0172048_4	UniRef90	UniRef90_A0A6A8GSS2	XkdX family protein	NA
UHGV-0172048_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0172048_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0172048_5	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0172048_7	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0172048_7	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0172048_7	UniRef90	UniRef90_UPI001CDC1E23	collagen-like protein	NA
UHGV-0172048_7	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-0172048_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0172048_8	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0172048_8	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0172048_8	UniRef90	UniRef90_UPI001CDBB667	collagen-like protein	NA
UHGV-0172048_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0172048_9	PHROG	phrog_14448	NA	unknown function
UHGV-0172048_9	UniRef90	UniRef90_A0A8B5GZK2	BppU_IgG domain-containing protein	NA
UHGV-0172048_9	eggNOG-mapper	1234679.BN424_2128	NA	NA
UHGV-0172048_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0172048_10	PHROG	phrog_3558	tail protein	tail
UHGV-0172048_10	UniRef90	UniRef90_F7R2Y6	Prophage_tail domain-containing protein	NA
UHGV-0172048_10	eggNOG-mapper	1234679.BN424_2612	Prophage endopeptidase tail	NA
UHGV-0172048_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172048_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172048_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172048_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172048_10	Structural annotation	PF06605, PF01183, PF21683, MF_00729, TIGR01665, NF002575, COG4926, COG3757	NA	NA
UHGV-0172048_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172048_11	UniRef90	UniRef90_A0A1K1KNS1	Prophage Lp1 protein 51	NA
UHGV-0172048_11	eggNOG-mapper	1234679.BN424_2130	phage tail	NA
UHGV-0172048_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172048_11	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0172048_12	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0172048_12	UniRef90	UniRef90_A0A4V3RPC5	SLT domain-containing protein	NA
UHGV-0172048_12	eggNOG-mapper	1114972.AUAW01000005_gene311	domain protein	NA
UHGV-0172048_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0172048_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0172048_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172048_12	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0172048_13	PHROG	phrog_706	NA	unknown function
UHGV-0172048_13	UniRef90	UniRef90_V7I1D6	Bacteriophage Gp15 protein	NA
UHGV-0172048_13	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0172048_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172048_13	Structural annotation	PF06854	NA	NA
UHGV-0172048_14	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0172048_14	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-0172048_14	eggNOG-mapper	1158614.I592_01128	NA	NA
UHGV-0172048_14	Structural annotation	PF10666	NA	NA
UHGV-0172048_15	PHROG	phrog_820	major tail protein	tail
UHGV-0172048_15	UniRef90	UniRef90_A0A2Z4W0H3	Capsid protein	NA
UHGV-0172048_15	eggNOG-mapper	1423790.BN53_04200	domain, Protein	NA
UHGV-0172048_15	COG	COG5492	NA	NA
UHGV-0172048_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172048_16	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0172048_16	UniRef90	UniRef90_A0A3Q9VCS5	Minor capsid protein	NA
UHGV-0172048_16	eggNOG-mapper	1423790.BN53_04205	Minor capsid protein from bacteriophage	NA
UHGV-0172048_16	Structural annotation	PF12691	NA	NA
UHGV-0172048_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172048_17	UniRef90	UniRef90_A0A222W3P8	Capsid protein	NA
UHGV-0172048_17	eggNOG-mapper	1423790.BN53_04210	Minor capsid protein	NA
UHGV-0172048_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172048_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0172048_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0172048_18	UniRef90	UniRef90_A0A222W348	Minor capsid protein	NA
UHGV-0172048_18	eggNOG-mapper	1423767.BALU01000006_gene771	Minor capsid protein	NA
UHGV-0172048_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0172048_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0172048_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172048_19	UniRef90	UniRef90_Q5YA68	42	NA
UHGV-0172048_19	eggNOG-mapper	1423767.BALU01000006_gene772	NA	NA
UHGV-0172048_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-0172048_20	UniRef90	UniRef90_A0A0R2A8A8	Minor capsid protein	NA
UHGV-0172048_20	eggNOG-mapper	52979.O03966_9CAUD	viral capsid	NA
UHGV-0172048_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0172048_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172048_21	UniRef90	UniRef90_UPI001CC74605	phage scaffolding protein	NA
UHGV-0172048_21	eggNOG-mapper	1235801.C822_00660	Phage minor structural protein GP20	NA
UHGV-0172048_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172048_21	Structural annotation	PF06810	NA	NA
UHGV-0172048_22	PHROG	phrog_27123	NA	unknown function
UHGV-0172048_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172048_23	UniRef90	UniRef90_F7R2Z7	Minor capsid protein	NA
UHGV-0172048_23	eggNOG-mapper	1423767.BALU01000006_gene776	Phage minor capsid protein 2	NA
UHGV-0172048_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172048_23	Structural annotation	PF06152	NA	NA
UHGV-0172048_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172048_24	UniRef90	UniRef90_A0A0R2A9I7	Minor structural protein gp61	NA
UHGV-0172048_24	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172048_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172048_24	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0172048_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172048_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172048_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172048_25	UniRef90	UniRef90_F7R2Z9	Phage terminase, large subunit, PBSX family	NA
UHGV-0172048_25	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-0172048_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172048_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172048_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172048_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172048_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172048_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0172048_26	UniRef90	UniRef90_F7R300	Terminase small subunit	NA
UHGV-0172048_26	eggNOG-mapper	438780.D2KRB6_9CAUD	Terminase small subunit	NA
UHGV-0172048_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0172048_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0172048_27	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0172048_27	UniRef90	UniRef90_A0A8B2Z7Q9	NA	NA
UHGV-0172048_27	eggNOG-mapper	220668.lp_2426	Phage transcriptional regulator, ArpU family	NA
UHGV-0172048_27	Pfam	PF07374	NA	DUF1492
UHGV-0172048_27	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0172048_27	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0172048_28	Structural annotation	COG2771	NA	NA
UHGV-0172048_29	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0172048_29	UniRef90	UniRef90_F7R304	NA	NA
UHGV-0172048_29	eggNOG-mapper	525309.HMPREF0494_1798	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0172048_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0172048_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0172048_29	Structural annotation	PF01596, TIGR02469, COG3963	NA	NA
UHGV-0172048_30	KOfam	K14059	int; integrase	NA
UHGV-0172048_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0172048_30	UniRef90	UniRef90_UPI00189B7E56	site-specific integrase	NA
UHGV-0172048_30	eggNOG-mapper	525309.HMPREF0494_1797	Belongs to the 'phage' integrase family	NA
UHGV-0172048_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172048_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172048_30	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0172048_31	UniRef90	UniRef90_G2SN36	Putative trasposase	NA
UHGV-0172048_31	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172048_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172048_37	UniRef90	UniRef90_A0A848CEG1	NA	NA
UHGV-0172048_37	eggNOG-mapper	1069534.LRC_07200	NA	NA
UHGV-0172048_37	Pfam	PF06356	NA	DUF1064
UHGV-0172048_37	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0172048_39	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172048_39	UniRef90	UniRef90_UPI001C01EBDD	DnaD domain protein	NA
UHGV-0172048_39	eggNOG-mapper	1341157.RF007C_04420	NA	NA
UHGV-0172048_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0172048_39	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0172048_39	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0172048_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172048_39	Structural annotation	PF02295, TIGR01446, TIGR00373, COG3935	NA	NA
UHGV-0172048_40	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172048_40	UniRef90	UniRef90_F7R312	NA	NA
UHGV-0172048_40	eggNOG-mapper	557436.Lreu_1138	NA	NA
UHGV-0172048_40	Pfam	PF12684	NA	DUF3799
UHGV-0172048_40	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0172048_40	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0172048_41	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172048_41	UniRef90	UniRef90_F7R313	Phage recombination protein Bet	NA
UHGV-0172048_41	eggNOG-mapper	1033740.CAEW01000026_gene507	RecT family	NA
UHGV-0172048_41	Pfam	PF03837	RecT family	RecT
UHGV-0172048_41	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0172048_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0172048_42	eggNOG-mapper	908340.HMPREF9406_0152	NA	NA
UHGV-0172048_45	PHROG	phrog_23441	NA	unknown function
UHGV-0172048_45	UniRef90	UniRef90_UPI0018976303	tRNA (guanine-N1)-methyltransferase	NA
UHGV-0172048_46	PHROG	phrog_24289	NA	unknown function
UHGV-0172048_47	PHROG	phrog_7989	NA	unknown function
UHGV-0172048_48	PHROG	phrog_8594	NA	unknown function
UHGV-0172048_48	eggNOG-mapper	97137.C821_00651	NA	NA
UHGV-0172048_49	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0172048_49	UniRef90	UniRef90_UPI00067F562F	ORF6N domain-containing protein	NA
UHGV-0172048_49	eggNOG-mapper	349123.Lreu23DRAFT_4237	ORF6N domain	NA
UHGV-0172048_49	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0172048_49	COG	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	NA
UHGV-0172048_50	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0172048_50	UniRef90	UniRef90_UPI00136E0A0B	helix-turn-helix domain-containing protein	NA
UHGV-0172048_50	eggNOG-mapper	1300150.EMQU_2526	NA	NA
UHGV-0172048_50	Structural annotation	PF12844, NF041677, COG3655	NA	NA
UHGV-0172048_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0172048_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172048_51	UniRef90	UniRef90_A0A7H9EKA5	Helix-turn-helix domain-containing protein	NA
UHGV-0172048_51	eggNOG-mapper	1121864.OMO_02129	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172048_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172048_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172048_51	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0172048_52	PHROG	phrog_87	metallo-protease	other
UHGV-0172048_52	UniRef90	UniRef90_UPI00067F3357	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0172048_52	eggNOG-mapper	1423755.BAML01000004_gene414	IrrE N-terminal-like domain	NA
UHGV-0172048_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0172048_52	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0172048_53	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0172048_53	UniRef90	UniRef90_UPI001CBDEF35	Ltp family lipoprotein	NA
UHGV-0172048_53	eggNOG-mapper	762550.LEGAS_1618	Host cell surface-exposed lipoprotein	NA
UHGV-0172048_53	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0172048_53	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0172048_53	Structural annotation	PF07553, MF_01114, NF001062	NA	NA
UHGV-0172048_54	KOfam	K14059	int; integrase	NA
UHGV-0172048_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0172048_54	UniRef90	UniRef90_E7FPC8	Site-specific recombinase, phage integrase family	NA
UHGV-0172048_54	eggNOG-mapper	1423758.BN55_04135	Belongs to the 'phage' integrase family	NA
UHGV-0172048_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172048_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172048_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172048_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172048_55	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172048_55	PHROG	phrog_291	endolysin	lysis
UHGV-0172048_55	UniRef90	UniRef90_A0A8B2Z4I2	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0172048_55	eggNOG-mapper	1235801.C822_00168	Glycosyl hydrolases family 25	NA
UHGV-0172048_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172048_55	Pfam	PF01476	LysM domain	LysM
UHGV-0172048_55	COG	COG1388	LysM repeat	NA
UHGV-0172048_55	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA