UHGV-0172082

Genome information

Genome length 41,782 bps

CDS count 59

Completeness 99.75% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172082
vOTU ID	vOTU-010867
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588029
BioSample	SAMN09781777
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.02
Jumbo phage	No

Genome content
Genome length	41,782 bps
GC content	58.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.38%
Average CDS length	664.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172082_1	PHROG	phrog_21498	NA	unknown function
UHGV-0172082_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0172082_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0172082_2	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172082_2	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0172082_2	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0172082_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0172082_4	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0172082_4	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0172082_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0172082_4	Structural annotation	PF16677	NA	NA
UHGV-0172082_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172082_5	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0172082_5	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0172082_5	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0172082_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172082_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172082_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172082_6	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0172082_6	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0172082_6	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0172082_8	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0172082_9	PHROG	phrog_37329	NA	unknown function
UHGV-0172082_9	eggNOG-mapper	1395587.P364_0113810	Fibronectin type 3 domain	NA
UHGV-0172082_9	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0172082_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0172082_9	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0172082_11	PHROG	phrog_156	portal protein	head and packaging
UHGV-0172082_11	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0172082_11	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172082_12	PHROG	phrog_13908	NA	unknown function
UHGV-0172082_12	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0172082_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0172082_13	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0172082_13	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0172082_13	Pfam	PF13252	NA	DUF4043
UHGV-0172082_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0172082_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172082_15	PHROG	phrog_12105	NA	unknown function
UHGV-0172082_15	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0172082_16	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0172082_16	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0172082_17	PHROG	phrog_22978	NA	unknown function
UHGV-0172082_17	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0172082_17	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0172082_18	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-0172082_19	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0172082_19	PHROG	phrog_819	tail protein	tail
UHGV-0172082_19	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0172082_19	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0172082_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172082_19	Structural annotation	PF06903	NA	NA
UHGV-0172082_20	PHROG	phrog_37900	NA	unknown function
UHGV-0172082_20	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0172082_20	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0172082_20	Pfam	PF19789	NA	DUF6273
UHGV-0172082_20	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0172082_20	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0172082_21	PHROG	phrog_937	hemolysin	other
UHGV-0172082_21	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0172082_23	PHROG	phrog_6918	holin	lysis
UHGV-0172082_23	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0172082_23	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0172082_23	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0172082_23	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0172082_24	PHROG	phrog_14030	NA	unknown function
UHGV-0172082_24	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0172082_24	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0172082_24	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0172082_25	PHROG	phrog_5783	NA	unknown function
UHGV-0172082_25	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-0172082_25	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-0172082_25	Pfam	PF01936	NYN domain	NYN
UHGV-0172082_25	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0172082_25	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0172082_28	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0172082_28	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0172082_29	KOfam	K14059	int; integrase	NA
UHGV-0172082_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0172082_29	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0172082_29	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0172082_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172082_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172082_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172082_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172082_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172082_30	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0172082_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172082_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172082_34	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0172082_34	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0172082_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172082_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172082_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172082_38	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0172082_38	Structural annotation	PF12286	NA	NA
UHGV-0172082_39	Structural annotation	PF10548	NA	NA
UHGV-0172082_41	Structural annotation	NF041247	NA	NA
UHGV-0172082_42	Structural annotation	PF05082	NA	NA
UHGV-0172082_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0172082_46	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0172082_46	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0172082_46	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0172082_46	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0172082_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0172082_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0172082_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172082_46	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0172082_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0172082_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172082_47	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0172082_47	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0172082_47	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0172082_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0172082_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172082_47	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0172082_48	Pfam	PF04448	NA	DUF551
UHGV-0172082_48	Structural annotation	NF041588	NA	NA
UHGV-0172082_49	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0172082_53	PHROG	phrog_22543	NA	unknown function
UHGV-0172082_54	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172082_54	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0172082_54	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0172082_54	Pfam	PF06356	NA	DUF1064
UHGV-0172082_54	Structural annotation	PF06356	NA	NA
UHGV-0172082_56	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172082_56	eggNOG-mapper	862514.HMPREF0623_0036	NA	NA
UHGV-0172082_58	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0172082_58	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0172082_58	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0172082_58	Structural annotation	PF08271	NA	NA
UHGV-0172082_59	PHROG	phrog_21498	NA	unknown function
UHGV-0172082_59	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0172082_59	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA