UHGV-0172163

Genome information

Genome length 30,773 bps

CDS count 41

Completeness 68.25% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172163
vOTU ID	vOTU-028583
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587044
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.56
Jumbo phage	No

Genome content
Genome length	30,773 bps
GC content	41.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	88.48%
Average CDS length	667.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172163_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172163_1	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0172163_1	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0172163_1	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0172163_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172163_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172163_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172163_1	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172163_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172163_3	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0172163_3	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0172163_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172163_4	PHROG	phrog_16164	NA	unknown function
UHGV-0172163_4	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0172163_6	PHROG	phrog_134	NA	unknown function
UHGV-0172163_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0172163_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0172163_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0172163_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172163_7	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0172163_7	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0172163_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172163_7	COG	COG2369	NA	NA
UHGV-0172163_7	Structural annotation	PF06152	NA	NA
UHGV-0172163_8	PHROG	phrog_3754	NA	unknown function
UHGV-0172163_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0172163_9	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0172163_9	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0172163_10	PHROG	phrog_21718	NA	unknown function
UHGV-0172163_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172163_11	PHROG	phrog_22984	NA	unknown function
UHGV-0172163_12	PHROG	phrog_16490	NA	unknown function
UHGV-0172163_12	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0172163_13	PHROG	phrog_20016	NA	unknown function
UHGV-0172163_13	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0172163_13	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0172163_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172163_14	PHROG	phrog_28802	NA	unknown function
UHGV-0172163_14	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0172163_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172163_15	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0172163_15	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0172163_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172163_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172163_16	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0172163_16	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0172163_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0172163_16	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172163_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172163_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0172163_18	UniRef90	UniRef90_UPI001001A229	NA	NA
UHGV-0172163_18	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0172163_19	PHROG	phrog_1129	holin	lysis
UHGV-0172163_19	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0172163_19	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0172163_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172163_19	Structural annotation	PF06946	NA	NA
UHGV-0172163_20	PHROG	phrog_3366	NA	unknown function
UHGV-0172163_20	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0172163_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0172163_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172163_21	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0172163_21	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0172163_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172163_21	Structural annotation	PF11114	NA	NA
UHGV-0172163_22	PHROG	phrog_3266	tail completion	connector
UHGV-0172163_22	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0172163_22	Structural annotation	PF12691	NA	NA
UHGV-0172163_23	PHROG	phrog_3099	NA	unknown function
UHGV-0172163_23	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0172163_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172163_24	PHROG	phrog_11299	NA	unknown function
UHGV-0172163_24	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0172163_24	Structural annotation	PF10666	NA	NA
UHGV-0172163_25	PHROG	phrog_706	NA	unknown function
UHGV-0172163_25	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0172163_25	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0172163_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172163_25	Structural annotation	PF06854	NA	NA
UHGV-0172163_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172163_26	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0172163_26	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0172163_26	COG	COG1511	NA	NA
UHGV-0172163_26	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0172163_27	PHROG	phrog_1194	NA	unknown function
UHGV-0172163_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172163_28	PHROG	phrog_6616	tail protein	tail
UHGV-0172163_28	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0172163_28	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0172163_28	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0172163_29	Structural annotation	PF14400, NF012201	NA	NA
UHGV-0172163_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0172163_30	PHROG	phrog_6745	endolysin	lysis
UHGV-0172163_30	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0172163_30	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0172163_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172163_30	Pfam	PF05257	CHAP domain	CHAP
UHGV-0172163_30	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0172163_30	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0172163_30	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0172163_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0172163_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0172163_31	UniRef90	UniRef90_A0A412ELC2	Recombinase family protein	NA
UHGV-0172163_31	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0172163_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0172163_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0172163_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0172163_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0172163_31	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0172163_32	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0172163_32	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0172163_32	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0172163_32	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0172163_32	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0172163_33	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0172163_33	PHROG	phrog_8810	NA	unknown function
UHGV-0172163_33	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0172163_33	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0172163_33	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0172163_33	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0172163_33	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0172163_33	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0172163_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0172163_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0172163_36	UniRef90	UniRef90_R5GZQ0	Helix-turn-helix protein	NA
UHGV-0172163_36	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0172163_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172163_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172163_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172163_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172163_37	UniRef90	UniRef90_A0A1M6M2C3	DNA binding domain-containing protein, excisionase family	NA
UHGV-0172163_37	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0172163_37	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0172163_37	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0172163_37	Structural annotation	PF12728, NF040990, COG3311	NA	NA