UHGV-0172264

Genome information

Genome length 35,206 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172264
vOTU ID	vOTU-046438
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592458
BioSample	SAMN09781743
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.91
Jumbo phage	No

Genome content
Genome length	35,206 bps
GC content	44.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.22%
Average CDS length	620.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172264_1	PHROG	phrog_27197	NA	unknown function
UHGV-0172264_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0172264_2	UniRef90	UniRef90_A0A354UNG6	Transcriptional regulator	NA
UHGV-0172264_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172264_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172264_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0172264_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0172264_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172264_3	UniRef90	UniRef90_A0A354UMW7	HTH cro/C1-type domain-containing protein	NA
UHGV-0172264_3	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172264_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172264_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172264_3	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0172264_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0172264_5	UniRef90	UniRef90_A0A354UNG6	Transcriptional regulator	NA
UHGV-0172264_5	eggNOG-mapper	717605.Theco_0946	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172264_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172264_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172264_9	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172264_9	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0172264_9	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0172264_9	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0172264_11	PHROG	phrog_774	NA	unknown function
UHGV-0172264_11	Structural annotation	PF10458	NA	NA
UHGV-0172264_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172264_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172264_12	UniRef90	UniRef90_A0A3D2D458	Single-stranded DNA-binding protein	NA
UHGV-0172264_12	eggNOG-mapper	635013.TherJR_2978	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0172264_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172264_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172264_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172264_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172264_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0172264_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172264_13	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-0172264_13	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0172264_13	Pfam	PF06356	NA	DUF1064
UHGV-0172264_13	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0172264_14	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172264_14	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-0172264_14	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0172264_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0172264_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172264_14	Structural annotation	PF14297	NA	NA
UHGV-0172264_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172264_17	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-0172264_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172264_17	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA
UHGV-0172264_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0172264_18	PHROG	phrog_17284	NA	unknown function
UHGV-0172264_18	UniRef90	UniRef90_A0A3D2D5S6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0172264_18	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-0172264_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0172264_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172264_18	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0172264_22	PHROG	phrog_3136	NA	unknown function
UHGV-0172264_22	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0172264_22	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0172264_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0172264_23	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0172264_23	eggNOG-mapper	40631.O64365_BPN15	NA	NA
UHGV-0172264_23	Pfam	PF14359	NA	DUF4406
UHGV-0172264_23	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0172264_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172264_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0172264_28	UniRef90	UniRef90_E5BHZ1	Terminase small subunit	NA
UHGV-0172264_28	eggNOG-mapper	1123405.AUMM01000017_gene2713	Terminase, small subunit	NA
UHGV-0172264_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0172264_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0172264_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0172264_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172264_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0172264_29	UniRef90	UniRef90_UPI0008D8FA41	PBSX family phage terminase large subunit	NA
UHGV-0172264_29	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0172264_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172264_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172264_29	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172264_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172264_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0172264_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172264_31	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-0172264_31	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-0172264_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172264_31	COG	COG2369	NA	NA
UHGV-0172264_31	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0172264_33	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0172264_33	Structural annotation	PF05065, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172264_35	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-0172264_36	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-0172264_37	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-0172264_39	Structural annotation	PF09097, TIGR02126	NA	NA
UHGV-0172264_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0172264_41	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0172264_41	COG	COG4964	Flp pilus assembly protein, secretin CpaC	NA
UHGV-0172264_41	Structural annotation	PF10651	NA	NA
UHGV-0172264_42	Structural annotation	PF07041	NA	NA
UHGV-0172264_43	Structural annotation	PF10651	NA	NA
UHGV-0172264_47	KOfam	K14059	int; integrase	NA
UHGV-0172264_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0172264_47	UniRef90	UniRef90_A0A353EXX9	Tyr recombinase domain-containing protein	NA
UHGV-0172264_47	eggNOG-mapper	596330.HMPREF0628_1084	Belongs to the 'phage' integrase family	NA
UHGV-0172264_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172264_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172264_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172264_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172264_48	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0172264_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172264_48	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0172264_48	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0172264_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172264_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172264_50	UniRef90	UniRef90_L7VL72	Putative transcriptional regulator	NA
UHGV-0172264_50	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0172264_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172264_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172264_50	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0172264_51	UniRef90	UniRef90_A0A7X8VAK6	NA	NA
UHGV-0172264_51	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0172264_51	Pfam	PF05339	NA	DUF739
UHGV-0172264_51	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0172264_52	PHROG	phrog_4433	NA	unknown function
UHGV-0172264_52	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0172264_52	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0172264_52	Structural annotation	NF000318	NA	NA